Template-based Modeling Results for TYPA_ECOLI

Submitted Primary Sequence

>Length 607
MIEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQRQNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLVPPIRMTLEQALEFIDDDELVEVTPTSIRIRKRHLTENDRRRANRAPKDD
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQRQNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLVPPIRMTLEQALEFIDDDELVEVTPTSIRIRKRHLTENDRRRANRAPKDD
CCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCCCCEEEHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCCEEEEECCCCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCEECCCCEEEEEECCCCEEEEEEEEEECCCCCCCEEECCCCCCCEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCEECCEEEEEEEECCCCCHHHHHHHHHHHCEEEEEEEECCCCEEEEEEEECCHHHCCCHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEECCEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCEEECCCEECCHHHHHHHCCCCEEEEECCHHEEEEEHHCCHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MIEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQRQNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLVPPIRMTLEQALEFIDDDELVEVTPTSIRIRKRHLTENDRRRANRAPKDD
5433010000000012010000120032122132223012201122301332301010100002021010000101000111010110021020000000032122210210012003220200000010123202031002100200020301232020000000012000122333224202200100032010032324110000000021121100000000121303432200002243322202002000221132120230200000001102303000000113113212113222210000000121111133232111220031013212310001012233221010102010001001220342311000020200012233332100110102022211110021013320101101112411000102000210010112012102010000000121121331312323110000113030000001001200210023122002100000102222010000223302212121332101011112010210020033110020013102011220133113323424545
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MIEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQRQNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLVPPIRMTLEQALEFIDDDELVEVTPTSIRIRKRHLTENDRRRANRAPKDD
1	MUSTER	3degC	0.298	0.830	2.508	threading_1	-MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDRE-MEAQVLDSMDLERERGITIKAQSVTLDYKAYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIV--IDATD------AVRCSAKTG----------VGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVM-STGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCIKDIHGAPVGDTLTLARNPKALPGFKKVKPVYAGLFPVSSDD----------YEAFRDALGKLSLNDASLFYEPESSSAGFRCGFLGLLHMEIIQERLEREDLDLITTAPTVVYEVETTELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGN-QVALTYEIPAEVVLDFFDRLKSTSRGYASLDYNFKRFQA---SDM--VRVDVLINGERVDALALITHNSQNRGRELVEKMKDLIP--------RQQDIAIQAAIGTHISTVKQL----------------------------------------------------------
2	SPARKS	2ywea	0.280	0.799	7.354	threading_2	MQKNVRNFCIIAH--HGKSTLADRLLEYTGAVKM-----------------QAVRMFYK--AKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEV---LGLDPEE----AILASAKEG----------IGIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGK---EYEVTEVG-AQTPKMTKFDKLSAGDVGYIKDVRDIRIGDTITHAKNPTKEPVPGFQPAKPMVYAGI-------YPAEDTTYEELRDALEKYAINDAAIVYEPESSPAGFRVGFLGLLHMEIVQERLEREGVKIITTAPNVIYRVKKKYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDPNTVYLEYEMPSEIIVDFHDKIKSISRGFASYDYEFIGYRP-----SDLIKLTVLINKKPVDALSFIADRAQKFARRVAEKLRETIPRQLFEVHIQGGKVRIKPLR--------------------------------------------------------------------
3	PROSPECT2	1wdtA	0.225	0.768	3.804	threading_3	-GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLGPIETDEGLLEYPVALASGEREI----------GVLPLLELILEALPSPERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAGQ-----VRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFARLPDPNVPVAL-------HPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQDYGVEVEFSVPKVPYRETHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGAL-SVVHAEVPLAEVLEYYKALPGLTGGAGAYTLEFSHYAEVP--------------------------------------------------------------------------------------------------------------------PHLAQRIVQERAQEG
4	PPA-I	3degC	0.310	0.817	8.735	threading_4	-MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDRE-MEAQVLDSMDLERERGITIKAQSVTLDYKAYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIV-GIDATD------AVRCSAKTG----------VGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVM-STGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCIKDIHGAPVGDTLTLARNPKALPGFKKVKPQVAGLFPVSSDD----------YEAFRDALGKLSLNDASLFYEPESSSAGFRCGFLGLLHMEIIQERLEREDLDLITTAPTVVYEVETTELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHG-NQVALTYEIPAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVD-----VLINGERVDALALITHNSQNRGRELVEKMKDLIPTHIIARS------TVKQL---------------------------------------------------------------------
5	HHPRED-l	1dar_A	0.308	0.641	4.077	threading_5	DLKRLRNIGIAAHIDAGKTTTTERILYYTGR--------------------------AAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGALGTDENIKITPVFLGSALKNK----------GVQLLLDAVVDYLPSPHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGR---KERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPVILE-----------------------------------------EEDPTFRVST-----QTIISGMGE---------LKREKVDANVGKPQVAYRETDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRG-NAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVP-KQVQEKLK--------------------------------------------------------------------------------------------------------------------------
6	HHPRED-g	3e3x_A	0.752	0.438	4.368	threading_6	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VDEPTVT-TFQVNTSPFAG-EG-FVTSRNILERLEKELVHNVALRVEQTDDPDKFRVSGRGELHLSILIEN-RREGFELAVSRPEVII-EEDGQL-EPFETVTIDV-EEHQGGI-ENIGLR-GEL---APDGKGRVR-DFI-PSRGLIGFQTEF-TLTSGSGLLYHTFDHYGPH-GGNIGQRVNGVLIANAAGKALTNALFNLQERGRLFIGHGVEVYEG-VIGIHSRDNDLTVNALK--------------AQVLTPPIV-TLEQALEFIDDDELVEVTPESIRIRK-FLTESDR-RAS------
7	SP3	2ywea	0.284	0.807	7.162	threading_7	MQKNVRNFCIIAH--HGKSTLADRLLEYTGAV-----------------KMQAVRMFYK--AKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEV---LGLDPEE----AILASAKEGIG----------IEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGK---EYEVTEVG-AQTPKMTKFDKLSAGDVGYIADVRDIRIGDTITHAKNPTKEPVPGFQPAKPMVYAGI-------YPAEDTTYEELRDALEKYAINDAAIVYEPESSPAGFRVGFLGLLHMEIVQERLEREGVKIITTAPNVIYRVKKKYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDPNTVYLEYEMPSEIIVDFHDKIKSISRGFASYDYEFIGYRP---SDL--IKLTVLINKKPVDALSFIADRAQKFARRVAEKLRETIPRQLFEVHIQ---VAKG---GKVIERIKPLR---------------------------------------------------------
8	SAM-T99	3e3xA	0.667	0.440	5.542	threading_8	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VDEPTVT-TFQVNTSPFAGE--GFVTSRNILERLEKELVHNVALRVEQTDDPDKFRVSGRGELHLSILIEN-RREGFELAVSRPEVIIEEDG--QLEPFETVTIDVEEHQGG--IENIGLRGE-----LDAPDGKGRVRDFIPSRGLIGFQTEF-TLTSGSGLLYHTFDHYGPH-GGNIGQRVNGVLIANAAGKALTNALFNLQERGRLFIGHGVEVYEG-VIGIHSRDNDLTVNALKAQVLT---------------PPIVTLEQALEFIDDDELVEVTPESIRIRKFLTESDRRAS--------
9	MUSTER	2ywfA	0.307	0.773	2.280	threading_9	MQKNVRNFCIIAHVDHGKSTLADRLLEYTGAI--------------------GITVKMQAVRMFYKTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVL--LDPEE------AILASAKEG----------IGIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTG---KEYEVTEVGAQ-TPKMTKFDKLSAGDVGYIADVRDIRIGDTITHAKNPEPVPGFQPAKP---MVYAG------IYPAEDTTYEELRDALEKYAINDAAIVYEPESSPAGFRVGFLGLLHMEIVQERLEREGVKIITTAPNVIYRVKKKYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDPNTVYLEYEMPSEIIVDFHDKIKSISRGFASYDYEFIGYRPSD-----------LIKLTNKKPVALSF-RAQKFARRVAEPRQEVH-GKVIASE------RI-----KPL---R------------------------------------------------------------
10	SPARKS	3cb4d	0.271	0.809	7.182	threading_10	-MKNIRNFSIIAHI----STLSDRIIQICG----------------------GQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIV-GIDAT------DAVRCSAKTG----------VGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVM-STGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCIKDIHGAPVGDTLTLARNPKALPGFKKVKPQVAGLFPVSSDD----------YEAFRDALGKLSLNDASLFYEPESSSAGFRCGFLGLLHMEIIQERLEREDLDLITTAPTVVYEVESRELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHG-NQVALTYEIPAEVVLDFFDRLKSTSRGYASLDYNFKRFQASD-----MVRVDVLINGERVDALALIRDNSQNRGRELVEKMKDLIPR-------QQFDIAIQAAIGTHISTVKQLRKNVLAKCYG------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.607 to 2dy1A SCOP code=b.43.3.1	TM-score=0.619 to 2dy1A SCOP code=b.43.3.1	TM-score=0.548 to 2dy1A SCOP code=b.43.3.1	TM-score=0.701 to 2dy1A SCOP code=b.43.3.1	TM-score=0.613 to 2dy1A SCOP code=b.43.3.1