Template-based Modeling Results for TRUD_ECOLI

Submitted Primary Sequence

>Length 349
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
CCCCCHHHHHCCCCCCCEEEEECCCHHEEECCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCHHHEEECCCCCCCCCEEEEEEEECCCCCCHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEECCCCCEEECCCCEEEEEEEECCCHHHHHHHHHHHCCCCCHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
5532321111122331202022213302012212232434120000100111120320010003104032310000134234210101000212233223122131420100100102340321113000000001203333102310210232101111001002110211200120022222231221120001001100011000200431212310301000112211101022321220131023330000010112232222310110121012222301210232313211100002033121212332101010102201000000110022223223225
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
1	MUSTER	1sb7B	0.994	0.963	3.364	threading_1	I-EFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKE-PDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKEL-ITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRALL-YPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINT---------
2	SPARKS	1si7a	1.000	0.974	8.375	threading_2	MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINT---------
3	PROSPECT2	1si7A	1.000	0.974	5.429	threading_3	MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINT---------
4	PPA-I	1sb7B	0.985	0.966	5.439	threading_4	SIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEP-DLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKEL-ITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEA-ARRALLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINT---------
5	HHPRED-l	1szw_A	1.000	0.946	10.537	threading_5	-IEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKE-PDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQ-------RNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKEL-ITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRA-LLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTT--------
6	HHPRED-g	1szw_A	1.000	0.946	9.575	threading_6	-IEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKE-PDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQ-------RNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKEL-ITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRA-LLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTT--------
7	SP3	1si7a	1.000	0.974	8.124	threading_7	MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINT---------
8	SAM-T99	1sb7B	0.955	0.963	7.209	threading_8	SIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKE-PDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEE-LAELQRRVNDKELITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRALLY-PQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELIN----------
9	MUSTER	1z2zA	0.238	0.974	2.133	threading_9	VPEIEKQLYSTDTTGLGGQLRQEIEDFIVKEITNREEGEEGKYLIVELTKRDWDTHHLTRTLSRILQVSQKRISVAGTKDKRALTTQKISIFDTDASE--IEKIHLKDIELKVLGRSRKSVELGDLWGNDFRITVRNIESPEETEALLKKTTDEGVPNFFGIQRFGSVRPVTHLVGKAIVEGRLGHERANHYRFVHGYQSYIYNIILCRRIEAGPLNRAVEGDIVCFRNEVGLPDVTSETVNA-NRLLKLGRAFITAPLPGYNTEFASGIPGEIENGVLKELGVSLEGFNPESSKGTRREVLLEVKPKFEAGEDELSKAVLEFLPKGSYATTVLREYKVNPLQ------
10	SPARKS	1z2za	0.242	0.971	5.997	threading_10	EKQIGINLYSTDTTGLGGQLRQEIEDFIVKEITNREEGEEGKYLIVELTKRDWDTHHLTRTLSRILQVSQKRISVAGTKDKRALTTQKISIFDTDASEIE--KIHLKDIELKVLGRSRKSVELGDLWGNDFRITVRNIESPEETEALLKKTTDEGVPNFFGIQRFGSVRPVTHLVGKAIVEGFRVLPQNLY-RFVHGYQSYIYNIILCRRIEAGILNRAVEGDIVCFRNEVGLPDSSTSETVNANRLLKLGRAFITAPLPGYNTEFASGIPGEIENGVLKELGVSLEGFFPESSKGTRREVLLEVKPKFEAGEDELKAVLEF-LPKGSYATTVLREYKVNPLQ------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.974 to 1sb7B TM-score=0.984 to native SCOP code=d.265.1.4	TM-score=0.976 to 1sb7B TM-score=0.979 to native SCOP code=d.265.1.4	TM-score=0.958 to 1sb7B TM-score=1.000 to native SCOP code=d.265.1.4	TM-score=0.958 to 1sb7B TM-score=1.000 to native SCOP code=d.265.1.4	TM-score=0.976 to 1sb7B TM-score=0.980 to native SCOP code=d.265.1.4

Experimental Structure

Download 1si7A

SCOP code=d.265.1.4