Template-based Modeling Results for TRMJ_ECOLI

Submitted Primary Sequence

>Length 246
MLQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNAHIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQNKGNKAE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNAHIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQNKGNKAE
CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCEEECCHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNAHIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQNKGNKAE
544201000120211110000010041010110000211132222000100111210120200210320131020000011222222221121320022001211322000000223220233002302100000012312011000000000010011112233323313333222121311220011012002202113331122002101200220303131010011001102222423334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNAHIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQNKGNKAE
1	MUSTER	3ilkA	0.506	0.939	2.746	threading_1	ALENIRIVLIETSHSGNIGSAARAK--TGLTQLCLVSPKS-VDEQSYALSAGAENIVKNARVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKVVAY--KGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLA-AVQLVSYELRAFLVQNNK--KNSLSLEKNYPTTDQLAYFFDYTERIYQSLGFIQNQG----VRKLKRLYYRAKLEKNELNILNGLSAVEKRIDLTK---
2	SPARKS	3ilka	0.511	0.939	4.192	threading_2	ALENIRIVLIETSHSGNIGSAARAK--TGLTQLCLVSPKS-VDEQSYALSAGAENIVKNARVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKVVA--YKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLA-AVQLVSYELRAFLVQ--NNKKNSLSLEKNYPTTDQLAYFFDYTERIYQSLGFIQNQG----VRKLKRLYYRAKLEKNELNILNGLSAVEKRIDLTK---
3	PROSPECT2	3ilkA	0.506	0.939	3.297	threading_3	ALENIRIVLIETSHSGNIGSAARA--KTGLTQLCLVSPKS-VDEQSYALSAGAENIVKNARVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKVVA--YKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLA-AVQLVSYELRAFLVQNNK--KNSLSLEKNYPTTDQLAYFFDYTERIYQSLGFIQNQG----VRKLKRLYYRAKLEKNELNILNGLSAVEKRIDLT---K
4	PPA-I	3ilkA	0.506	0.939	3.091	threading_4	ALENIRIVLIETSHSGNIGSAARAK--TGLTQLCLVSPKS-VDEQSYALSAGAENIVKNARVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKVVAY--KGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLA-AVQLVSYELRAFLVQNN--KKNSLSLEKNYPTTDQLAYFFDYTERIYQSLGFIQNQG----VRKLKRLYYRAKLEKNELNILNGLSAVEKRIDLTK---
5	HHPRED-l	3onp_A	0.362	0.618	5.261	threading_5	--IEPVFILVRPQ-GENIGAAARA-LNFGLGRLRIVDPRDGPNPKAVA-ASGAGRLLDHAGLFPTVAEAIRDCDYVFATTARGRELTKPV-TPERA-AHGRATGEGRRVGILFGPERTGLENEDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQ---------------------------------------------------------------------------------------
6	HHPRED-g	3onp_A	0.362	0.618	5.107	threading_6	--IEPVFILVRPQ-GENIGAAARA-LNFGLGRLRIVDPRDGPNPKAVA-ASGAGRLLDHAGLFPTVAEAIRDCDYVFATTARGRELTKPV-TPERA-AHGRALTGGRRVGILFGPERTGLENEDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQ---------------------------------------------------------------------------------------
7	SP3	3ilka	0.506	0.939	4.420	threading_7	ALENIRIVLIETSHSGNIGSAARAK--TGLTQLCLVSPKS-VDEQSYALSAGAENIVKNARVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKVVA--YKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLA-AVQLVSYELRAFLVQNNK--KNSLSLEKNYPTTDQLAYFFDYTERIYQSLGFIQNQG----VRKLKRLYYRAKLEKNELNILNGLSAVEKRIDLTK---
8	SAM-T99	3ilkA	0.519	0.939	5.318	threading_8	ALENIRIVLIETSHSGNIGSAARA--KTGLTQLCLVSP-KSVDEQSYALSAGAENIVKNARVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKVVAY--KGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLA-AVQLVSYELRAFLVQNNKK--NSLSLEKNYPTTDQLAYFFDYTERIYQSLGFI----QNQGVRKLKRLYYRAKLEKNELNILNG-LSAVEKRIDLTK--
9	MUSTER	3ilkA1	0.564	0.671	1.945	threading_9	ALENIRIVLIETSHSGNIGSAARAK--TGLTQLCLVSPKS-VDEQSYALSAGAENIVKNARVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKVVAY--KGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLA-AVQLVSYELRAFLVQNNKKNSLSL---------------------------------------------------------------------------
10	SPARKS	3onpa	0.331	0.626	3.204	threading_10	--IEPVFILVRPQ-GENIGAAARALNF-GLGRLRIVDPRDGWPNPKAVAASGAGRLLDHAGLFPTVAEAIRDCDYVFATTARGRELTKPVTPERAAHGRALTG-EGRRVGILFGPERTGLENEDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQ---------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.674 to 1ipaA SCOP code=c.116.1.1	TM-score=0.675 to 1ipaA SCOP code=c.116.1.1	TM-score=0.670 to 1ipaA SCOP code=c.116.1.1	TM-score=0.672 to 1ipaA SCOP code=c.116.1.1	TM-score=0.673 to 1ipaA SCOP code=c.116.1.1