Template-based Modeling Results for TRKA_ECOLI

Submitted Primary Sequence

>Length 458
MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRTLQDKFDLRVVQGHGSHPRVLREAGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRSPDYVRDADKLFHSDAVPIDHLIAPEQLVIDNIYRLIEYPGALQVVNFAEGKVSLAVVKAYYGGPLIGNALSTMREHMPHIDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIAASQHIRAVMSELQRLEKPYKRIMLVGGGNIGAGLARRLEKDYSVKLIERNQQRAAELAEKLQNTIVFFGDASDQELLAEEHIDQVDLFIAVTNDDEANIMSAMLAKRMGAKKVMVLIQRRAYVDLVQGSVIDIAISPQQATISALLSHVRKADIVGVSSLRRGVAEAIEAVAHGDESTSRVVGRVIDEIKLPPGTIIGAVVRGNDVMIANDNLRIEQGDHVIMFLTDKKFITDVERLFQPSPFFL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRTLQDKFDLRVVQGHGSHPRVLREAGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRSPDYVRDADKLFHSDAVPIDHLIAPEQLVIDNIYRLIEYPGALQVVNFAEGKVSLAVVKAYYGGPLIGNALSTMREHMPHIDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIAASQHIRAVMSELQRLEKPYKRIMLVGGGNIGAGLARRLEKDYSVKLIERNQQRAAELAEKLQNTIVFFGDASDQELLAEEHIDQVDLFIAVTNDDEANIMSAMLAKRMGAKKVMVLIQRRAYVDLVQGSVIDIAISPQQATISALLSHVRKADIVGVSSLRRGVAEAIEAVAHGDESTSRVVGRVIDEIKLPPGTIIGAVVRGNDVMIANDNLRIEQGDHVIMFLTDKKFITDVERLFQPSPFFL
CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCEEEEEECCCCHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHCCCCHHHEEECCCCCEEEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEEEEECCEECCCCCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCCCHHHCCCCCCCEEEEEEECCEEECCCCCCEECCCCEEEEEECCHHHHHHHHHHHCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRTLQDKFDLRVVQGHGSHPRVLREAGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRSPDYVRDADKLFHSDAVPIDHLIAPEQLVIDNIYRLIEYPGALQVVNFAEGKVSLAVVKAYYGGPLIGNALSTMREHMPHIDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIAASQHIRAVMSELQRLEKPYKRIMLVGGGNIGAGLARRLEKDYSVKLIERNQQRAAELAEKLQNTIVFFGDASDQELLAEEHIDQVDLFIAVTNDDEANIMSAMLAKRMGAKKVMVLIQRRAYVDLVQGSVIDIAISPQQATISALLSHVRKADIVGVSSLRRGVAEAIEAVAHGDESTSRVVGRVIDEIKLPPGTIIGAVVRGNDVMIANDNLRIEQGDHVIMFLTDKKFITDVERLFQPSPFFL
11000000020001002102224110000122131032024302010010101213002302032010000001111000000100121142201002022230131012002222130110000221002100210211001100211412010000202320311121021033213321010000112321121312120231110000012322300001122233212100000002000000220344110100222331022004313301001010021300232403301000000221100000010034120310000024420020032030100000210001000110232300000002412120010000113322411221032031331000000011310100333220241010000002330021024102222224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRTLQDKFDLRVVQGHGSHPRVLREAGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRSPDYVRDADKLFHSDAVPIDHLIAPEQLVIDNIYRLIEYPGALQVVNFAEGKVSLAVVKAYYGGPLIGNALSTMREHMPHIDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIAASQHIRAVMSELQRLEKPYKRIMLVGGGNIGAGLARRLEKDYSVKLIERNQQRAAELAEKLQNTIVFFGDASDQELLAEEHIDQVDLFIAVTNDDEANIMSAMLAKRMGAKKVMVLIQRRAYVDLVQGSVIDIAISPQQATISALLSHVRKADIVGVSSLRRGVAEAIEAVAHGDESTSRVVGRVIDEIKLPPGTIIGAVVRGNDVMIANDNLRIEQGDHVIMFLTDKKFITDVERLFQPSPFFL
1	MUSTER	3l4bC	0.227	0.472	1.184	threading_1	MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIFKKM------GITTVLNLTTLITNTVEALIFPDEFSSIIPLEQG-IEFLSVNVEEDSPVVGKKLKDLP--LPR-DSIIAAIVRGGVLVVPRGDTEILSGDKLYVIVSAEAKETVEETLL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2	SPARKS	3l4bc	0.238	0.467	2.958	threading_2	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKVIIIGGETTAYYLARSMLSKYGVVIINKDRELCEEFAKKL-KATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVNLFIAQLVMKFGVKRVVSLVNDPGNMEIFKKMGITTVLNLTTLITNTVEALIFPDEFSSIIPLEQG----IEFLSVNVEEDSPVVGKKLKDLPLPRDSIIAAIVRGGVLVVPRGDTEILSGDKLYVIV-SAEAKETVEETLL------
3	PROSPECT2	3mt5A	0.127	0.963	2.646	threading_3	KHIVVCGHITLESNFLKDFLHKDRDIVFLHNISPNLELERHFTQVEFYQGSVLNPHDLARVKIESADACLILANKDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMVSNEMYTEYLSSAFVGLSFPTVCELCVKLKLLMIAIEYSRILINPGNHLKIQEGTLGFFIASDAKEVKRAFFYCKDNMLSGHVVVCIFGDVSRNLVMPLHELKHIVFVGSIEKREWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANDKECILASLNIKSMQFDPIITELVNDTNVQFLDQDDDDDPDTELYLTQPFAEALIAEENALRGGYSTRDRCRVAQLALLDGPFADLGDGGCYGDLFCKYNMLCFGIYRLRDITNPPYEFELVPTDLIFCLM-----------------QFD
4	HHPRED-l	3naf_A	0.132	0.956	2.138	threading_4	KHIVVCGHISVSNFLKDFLHKVNVEIVFLHNISPNLEALFKFTQVEFYQGSVLNPHDLARVKIESADACLILANEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANFSSSNEMYTEYLS--SAFVGLSFPTVCELFVKLKLLMIAIEYESRLINPGNHLKIQEGTLGFFIASDAKEVKRAKYFHAMTVLSGHVVVCIFGDIGLRLVMPLRELKHIVFVGSIE-YLKREWHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANDKECILASLNIKSTGVIPIITELVNDTNVQFLDQDDDGTAFAVSVLD-SLMSATLVTGGATPELEARGGNRDRCRVAQLALLDGPLGDGGCYGDLFLTYNMLCFGIYRLLRYINPPYEFELVPTDLIFCLM-QFDH---------------
5	PPA-I	3l4bC	0.222	0.472	2.196	threading_5	MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIFKKMG------ITTVLNLTTLITNTVEALIFPDEFSSIIPLEQG-IEFLSVNVEEDSPVVGKKLKDL---PLPRDSIIAAIVRGGVLVVPRGDTEILSGDKLYVIVSAEAKETVEETLL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6	HHPRED-g	3l4b_C	0.229	0.467	2.332	threading_6	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKVIIIGGETTAYYLARSMLRKYGVVIINKDRELCEEFAKKLK-ATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVNLFIAQLVMKFGVKRVVSLVNDPGNMEIFKKMGITTVLNLTTLITNTVEALIFPDEFSSIIPLEQG-IEFLSVNVE---EDSPVVGKKLKDLPLPRDSIIAAIVRGGVLVVPRGDTEILSGDKLYVIVSA-EAKETVEETLL------
7	SAM-T99	3l4bC	0.219	0.469	4.441	threading_7	MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIF------KKMGITTVLNLTTLITNTVEALIFPDEFSSIIPLEQG-IEFLSVNVEEDSPVVGKKLKDLPL---PRDSIIAAIVRGGVLVVPRGDTEILSGDKLYVIVSAEAKETVEETL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8	SPARKS	1lnqa1	0.129	0.474	2.205	threading_8	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RHVVICGWSESTLECLRELR-GSEVFVLAEDENVRKKVLR--SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDESRIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIVTGVIIIGVGRGDELIIPPRDYSFRAGDIILGIG-KPEEIERLKNYISA-----
9	HHPRED-g	3l4b_C	0.227	0.472	2.328	threading_9	MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVNLFIAQLVMKDFGVKRVVSLVNDPGNME----IF--KKMGITTVLNLTTLITNTVEALIFPDEFSSIIPLEQG-IEFLSVNVEEDSPVVGKKLKDLP--LPR-DSIIAAIVRGGVLVVPRGDTEILSGDKLYVIVSAEAKETVEETLL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10	PPA-I	2aemA	0.126	0.485	1.911	threading_10	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AKSRHVVICGWSESTLECLRELR-GSEVFVLAEDENVRKKVLRS--GANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDESRIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDGVIIIGVGRGDELIIPPRDYSFRAGDIILGIG-KPEEIERLKNYISALV---

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.567 to 1lssA SCOP code=c.2.1.9	TM-score=0.570 to 1lssA SCOP code=c.2.1.9	TM-score=0.561 to 1lssA SCOP code=c.2.1.9	TM-score=0.520 to 1lssA SCOP code=c.2.1.9	TM-score=0.525 to 1id1A SCOP code=c.2.1.9