Template-based Modeling Results for THII_ECOLI

Submitted Primary Sequence

>Length 482
MKFIIKLFPEITIKSQSVRLRFIKILTGNIRNVLKHYDETLAVVRHWDNIEVRAKDENQRLAIRDALTRIPGIHHILEVEDVPFTDMHDIFEKALVQYRDQLEGKTFCVRVKRRGKHDFSSIDVERYVGGGLNQHIESARVKLTNPDVTVHLEVEDDRLLLIKGRYEGIGGFPIGTQEDVLSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEIGVRQVAHYLWNRFGSSHRVRFVAINFEPVVGEILEKIDDGQMGVILKRMMVRAASKVAERYGVQALVTGEALGQVSSQTLTNLRLIDNVSDTLILRPLISYDKEHIINLARQIGTEDFARTMPEYCGVISKSPTVKAVKSKIEAEEEKFDFSILDKVVEEANNVDIREIAQQTEQEVVEVETVNGFGPNDVILDIRSIDEQEDKPLKVEGIDVVSLPFYKLSTKFGDLDQNKTWLLWCERGVMSRLQALYLREQGFNNVKVYRP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKFIIKLFPEITIKSQSVRLRFIKILTGNIRNVLKHYDETLAVVRHWDNIEVRAKDENQRLAIRDALTRIPGIHHILEVEDVPFTDMHDIFEKALVQYRDQLEGKTFCVRVKRRGKHDFSSIDVERYVGGGLNQHIESARVKLTNPDVTVHLEVEDDRLLLIKGRYEGIGGFPIGTQEDVLSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEIGVRQVAHYLWNRFGSSHRVRFVAINFEPVVGEILEKIDDGQMGVILKRMMVRAASKVAERYGVQALVTGEALGQVSSQTLTNLRLIDNVSDTLILRPLISYDKEHIINLARQIGTEDFARTMPEYCGVISKSPTVKAVKSKIEAEEEKFDFSILDKVVEEANNVDIREIAQQTEQEVVEVETVNGFGPNDVILDIRSIDEQEDKPLKVEGIDVVSLPFYKLSTKFGDLDQNKTWLLWCERGVMSRLQALYLREQGFNNVKVYRP
CEEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEECCCCHHHHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEECCCHHHHHCCCCCCCCCCEEECCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKFIIKLFPEITIKSQSVRLRFIKILTGNIRNVLKHYDETLAVVRHWDNIEVRAKDENQRLAIRDALTRIPGIHHILEVEDVPFTDMHDIFEKALVQYRDQLEGKTFCVRVKRRGKHDFSSIDVERYVGGGLNQHIESARVKLTNPDVTVHLEVEDDRLLLIKGRYEGIGGFPIGTQEDVLSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEIGVRQVAHYLWNRFGSSHRVRFVAINFEPVVGEILEKIDDGQMGVILKRMMVRAASKVAERYGVQALVTGEALGQVSSQTLTNLRLIDNVSDTLILRPLISYDKEHIINLARQIGTEDFARTMPEYCGVISKSPTVKAVKSKIEAEEEKFDFSILDKVVEEANNVDIREIAQQTEQEVVEVETVNGFGPNDVILDIRSIDEQEDKPLKVEGIDVVSLPFYKLSTKFGDLDQNKTWLLWCERGVMSRLQALYLREQGFNNVKVYRP
21100111010103132111200310020023004413320102221100002033332221012002302001100101102232032002100210332142210102021233231202101210010003203202020331302000101332000001213012101111231000000310100000100132202010000001212232002200210122112223020000103200120133033221000011000200120033220200000321122222112002002300312012101222131002002402121001222320121132222422321011121212100012001102211223123223331121221111123100011222321334203131110010102201210240233120000013110021001103423142021225
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKFIIKLFPEITIKSQSVRLRFIKILTGNIRNVLKHYDETLAVVRHWDNIEVRAKDENQRLAIRDALTRIPGIHHILEVEDVPFTDMHDIFEKALVQYRDQLEGKTFCVRVKRRGKHDFSSIDVERYVGGGLNQHIESARVKLTNPDVTVHLEVEDDRLLLIKGRYEGIGGFPIGTQEDVLSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEIGVRQVAHYLWNRFGSSHRVRFVAINFEPVVGEILEKIDDGQMGVILKRMMVRAASKVAERYGVQALVTGEALGQVSSQTLTNLRLIDNVSDTLILRPLISYDKEHIINLARQIGTEDFARTMPEYCGVISKSPTVKAVKSKIEAEEEKFDFSILDKVVEEANNVDIREIAQQTEQEVVEVETVNGFGPNDVILDIRSIDEQEDKPLKVEGIDVVSLPFYKLSTKFGDLDQNKTWLLWCERGVMSRLQALYLREQGFNNVKVYRP
1	MUSTER	1vbkA	0.223	0.622	1.897	threading_1	MNVVIVRYGEIGTKSRQTRSWFEKILMNNIREALVTEEPYKEIFSRHGRIIVKTNS---PKEAANVLVRVFGIVSISPAMEVE-ASLEKINRTALLMFRKKAERPKFRVTARRITKFPLDSLEIQAKVGEYILNN-ENCEVDLKNYDIEIGIEIMQGKAYIYTEKIKGWGGLPIGTEGRMIGILHDEL-SALAIFLMMKRGVEVIPVYIG----KDDKNLEKVRSLWNLLKRYSYGSKGFLVVAES----------------------FDRVLKLIRDFGVKGVIKGLRPNDLNSEVSEITEDFKMF-PVPVYYPLIALPEEYIKSVKERLGL-----------------------------------------------------------------------------------------------------------------------------------------------------
2	SPARKS	1yt8a	0.116	0.861	1.323	threading_2	RELALLPFAQAHPLFANLP---LSRLELEIHARVPRRDTP---------ITVYDDGEGLAPVAAQRLHDL-GYSDVALLDGELFRDVNVPSKAFGELVEAERHTPS------------LAAEEVQALLD----ARAEAVILDARRFDE--YQTSIPGGISVPGAELVRVAELAPDPRTRVIVNCAGRTRSIIGTQSLLNAGI--------------PNPVAALRNGTIGWTLAGQQLEH------------GQTRRFGAISQDTRKAAAQRARAVADRAGVERL-DLAGLAQWQDEHDRTTYLLPEEYEAGHLPGSRSTPGGQLVQ-----ETDHVASVRGARLVLVDDDGVRANSASWLAQGWQVAVLDGLSEADFSERGAWSAPLPRQPRADTIDPTTLADWEPGTRVLDFTASANYAKRHIP----GAAWVLRSQLKQALERLGTAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDG
3	SPARKS	1vbka	0.232	0.616	5.526	threading_3	MNVVIVRYGEIGTKSRQTRSWFEKILMNNIREALVTEEVPYEIFSRHGRIIVKTNS---PKEAANVLVRVFGIVSISPAMEVE-ASLEKINRTALLMFRKKAERPKFRVTARRITKFPLDSLEIQAKVGEYILNNE-NCEVDLKNYDIEIGIEIMQGKAYIYTEKIKGWGGLPIGTEGRMIGILHDEL-SALAIFLMMKRGVEVIPVYIGKDD----KNLEKVRSLWNLLKRYSYGSKVVAESFDRVLKLIRD-------------------------FGVKGVIKGLRPNDLNSEVSEITEDFKM-FPVPVYYPLIALPEEYIKSVKERLGL-----------------------------------------------------------------------------------------------------------------------------------------------------
4	MUSTER	2c5sA	0.280	0.763	2.447	threading_4	YEYILVRYGEM-----KNRSKFVSTLKDNVKFKLKKFP-NIKIDATHDRMYIQLNGED-HEAVSERLKDVFGIHKFNLAMKVPS-ELEDIKKGALAAFLQVKDVKTFKITVHRSYKFPMRTMELLPEIGGHILENTEDITVDVHNPDVNVRVEIRSGYSYIMCDERMGAGGLPVGVGGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTEVQKTINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQTLDSMHTINEVTNYPVIRPLITMDKLEIIKIAEEIGTYDISIRP------------YKPKREKANRFEAKYFTPLIDEAVANKETMVLQTVE----------------------------------------------------------------------------------------------
5	SPARKS	2c5sa	0.282	0.766	7.347	threading_5	YEYILVRYGEMG----KNRSKFVSTLKDNVKFKLKKFP-NIKIDATHDRMYIQLNGED-HEAVSERLKDVFGIHKFNLAMKVP-SELEDIKKGALAAFLQVKDVKTFKITVHRSYKFPMRTMELLPEIGGHILENTEDITVDVHNPDVNVRVEIRSGYSYIMCDERMGAGGLPVGVGGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTEVQKTINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQTLDSMHTINEVTNYPVIRPLITMDKLEIIKIAEEIGTYDISIRP------------YKPKREKANRFEAKYDTPLIDEAVANKETMVLQTVE----------------------------------------------------------------------------------------------
6	PROSPECT2	2c5sA	0.281	0.768	3.796	threading_6	YEYILVRYGEMGKN----RSKFVSTLKDNVKFKLKKFPNI-KIDATHDRMYIQLNGED-HEAVSERLKDVFGIHKFNLAMKVP-SELEDIKKGALAAFLQVKDVKTFKITVHRSYKFPMRTMELLPEIGGHILENTEDITVDVHNPDVNVRVEIRSGYSYIMCDERMGAGGLPVGVGGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTEVQKTINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQTLDSMHTINEVTNYPVIRPLITMDKLEIIKIAEEIGTYDISIRPYKPK------------REKANRFEAKYDFTPLIDEAVA----------------------------NKETMVLQT-----------------------------------------------------------------VE
7	PPA-I	2c5sA	0.279	0.766	4.235	threading_7	YEYILVRYGEMG----KNRSKFVSTLKDNVKFKLKKFP-NIKIDATHDRMYIQLNGED-HEAVSERLKDVFGIHKFNLAMKVP-SELEDIKKGALAAFLQVKDVKTFKITVHRSYKFPMRTMELLPEIGGHILENTEDITVDVHNPDVNVRVEIRSGYSYIMCDERMGAGGLPVGVGGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTEVQKTINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQTLDSMHTINEVTNYPVIRPLITMDKLEIIKIAEEIGTYDISIRP------------YKPKREKANRFEAKYFTPLIDEAVANKETMVLQTVE----------------------------------------------------------------------------------------------
8	HHPRED-l	2c5s_A	0.286	0.761	7.674	threading_8	--YILVRYGEM---GKN-RSKFVSTLKDNVKFKLKKFP-NIKIDATHDRMYIQLNGED-HEAVSERLKDVFGIHKFNLAMKVP-SELEDIKKGALAAFLQVKDVKTFKITVHRSYKFPMRTMELLPEIGGHILENTEDITVDVHNPDVNVRVEIRSGYSYIMCDERMGAGGLPVGVGGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTEVQKTINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQTLDSMHTINEVTNYPVIRPLITMDKLEIIKIAEEIGTYDISIRPY------------KPKREKANRFEAKYDFPLIDEAVANKETMVLQTVE----------------------------------------------------------------------------------------------
9	HHPRED-g	2c5s_A	0.289	0.761	7.100	threading_9	--YILVRYGEM---GKN-RSKFVSTLKDNVKFKLKKFP-NIKIDATHDRMYIQLNGE-DHEAVSERLKDVFGIHKFNLAMKVP-SELEDIKKGALAAFLQVKDVKTFKITVHRSYKHPMRTMELLPEIGGHILENTEDITVDVHNPDVNVRVEIRSGYSYIMCDERMGAGGLPVGVGGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTEVQKTINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQTLDSMHTINEVTNYPVIRPLITMDKLEIIKIAEEIGTYDISIRPY------------KPKREKANRFEAKYDFTLIDEAVANKETMVLQTVE----------------------------------------------------------------------------------------------
10	SP3	2c5sa	0.282	0.766	7.612	threading_10	YEYILVRYGEM---GK-NRSKFVSTLKDNVKFKLKKFPN-IKIDATHDRMYIQLNGED-HEAVSERLKDVFGIHKFNLAMKVPS-ELEDIKKGALAAFLQVKDVKTFKITVHRSYKFPMRTMELLPEIGGHILENTEDITVDVHNPDVNVRVEIRSGYSYIMCDERMGAGGLPVGVGGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTEVQKTINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQTLDSMHTINEVTNYPVIRPLITMDKLEIIKIAEEIGTYDISIRP------------YKPKREKANRFEAKYDTPLIDEAVANKETMVLQTVE----------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.791 to 1vbkA SCOP code=c.26.2.6	TM-score=0.791 to 1vbkA SCOP code=c.26.2.6	TM-score=0.780 to 1yt8A SCOP code=c.46.1.2	TM-score=0.762 to 1vbkA SCOP code=c.26.2.6	TM-score=0.841 to 2c5sA SCOP code=c.26.2.6