Template-based Modeling Results for TDCG_ECOLI

Submitted Primary Sequence

>Length 454
MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSHIVVDLYGSLSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGAHIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEELLSKTYYSVGGGFIVEEEHFGLSHDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHDGIERGMNTEGVLPGPLNVPRRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENAAGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNERSIARYFLAAGAIGALYKMNASISGAEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPCIERNAINAVKAVNAARMAMRRTSAPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIKVVCG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSHIVVDLYGSLSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGAHIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEELLSKTYYSVGGGFIVEEEHFGLSHDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHDGIERGMNTEGVLPGPLNVPRRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENAAGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNERSIARYFLAAGAIGALYKMNASISGAEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPCIERNAINAVKAVNAARMAMRRTSAPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIKVVCG
CCCHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCEECCCCCCCEEECCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCEEEEHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSHIVVDLYGSLSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGAHIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEELLSKTYYSVGGGFIVEEEHFGLSHDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHDGIERGMNTEGVLPGPLNVPRRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENAAGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNERSIARYFLAAGAIGALYKMNASISGAEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPCIERNAINAVKAVNAARMAMRRTSAPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIKVVCG
5400100021000011010000010021002203311223212201010000002103120001000100122113312132021002102321201122212201122232000123112303100100012344310110000011100010221222331322121212000100300332212000001112111213220120013002002201331132312011212122200101221222332221110000000000000122201112011011111000000000002322421222000200000000000021111000111102110000000000000201212220002001100301000101112120200001110000020000010002212213010120020012003301210211131100120114
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSHIVVDLYGSLSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGAHIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEELLSKTYYSVGGGFIVEEEHFGLSHDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHDGIERGMNTEGVLPGPLNVPRRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENAAGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNERSIARYFLAAGAIGALYKMNASISGAEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPCIERNAINAVKAVNAARMAMRRTSAPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIKVVCG
1	PROSPECT2	1gw5b	0.093	0.943	1.360	threading_1	VKKVIAAMTVGCMQTDNLEL--KKLVYLYLMNYAKSQPDMAIMAVNS----FVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKHDINAQMVEDQGFLDSLRDLIADSN------------------PMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCNYNPKDDREAQSICERVSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVVDFVRKAVRAIGRCAIKVEQSAERCVST--LLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTKKPSETQELVFV
2	SPARKS	2iafa	0.433	0.295	2.992	threading_2	---------------SSHTVGPL-AANAFLQLLEQKNLFDKTQRVKVELYGSLALTGKGHGTDKAILNGLENKAPESIPRH-------EILDSNLLNL-AGKKEIPFHEATDFLFLQKLLPKHSNG-RFSAFDGNANLIEQVYYSIGGGFITTEEDFDK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	2aj4A	0.117	0.826	1.238	threading_3	VISIIKKFYVTIDPSVSDWSNYFKCGSFLKKLAPERFASAPLAGLQVFCEGDVP-TGSGLSSSAAFVVKANMGPGYHMSKQNLMRITVVAEHYVGVNCGEEDHALYVEFKPQLKATPKFPQLKNHEISFVIANT-----------------------LVVSNKFETAPTNYNLRVVEVTTAAN------VLAATYGVVLLNKGNLRDFMNVYYARYH-------NISTPWNGDIESGTKMLVLVEESLANKKQGFSVDDVAQSLNCSREEFTRDYLTTSPVRFQVLK--------LYQRAKHV--------YSESLRVLKAVKLMTTFTADEDFFK-----QFGALMNESQASCDKLYECSCPEIDKICSIALSNGSYLTGAGWGGCTVHLV---------------------PGGPNGNIEKVKEALANEFYKTDAELENASKPALGSCLYEL
4	PPA-I	2iqqA	0.429	0.308	1.264	threading_4	---------------SSHTVGP-LAANAFLQLLEQKNLFDKTQRVKVELYGSLALTGKGHGTDKAILNGLENKAPETVDPASIPR--HEILDSNLLNLA-GKKEIPFHEATDFLFLQELLPKHSNGRFSAFDGNANLLIEQVYYSIGGGFITTEEDFDK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	PROSPECT2	1jdha	0.109	0.872	1.237	threading_5	AVELTKLLNSKKEASRHAIMRSPQMVSAIVRTMQN----TNDVETARCTAGTLHNLSHHREGLLAILVKMLGSPVDSVLFYAITTLHNLLLHQEGA--------------KMAVRLAGGLQK----------------------------MVALLNKTNVKF--------LAITTDCLQILAYGNQESKLIILANIMRTYTYEKLLWTTSRVLKVLPAIVEAGGMGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVTCAAGILSNLTCNNYKNKMMVC-QVGGIEALVRTVLRAGDREDITEPAICALRHLMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLAHQDTQFVEGVRMEEIVEGCTGALNIQRVAAGVLCELAQDKEAAEAITAPLTELLHSRNEGVATYAAAVLFR---MS
6	HHPRED-l	2iaf_A	0.451	0.293	9.719	threading_6	---------------SSHTVGP-LAANAFLQLLEQKNLFDKTQRVKVELYGSLALTGKGHGTDKAILNGLENKAPE-------IPR-HEILDSNLLNLA-GKKEIPFHEATDFLFLQELLPKHSNG-RFSAFDGNANLIEQVYYSIGGGFITTEEDFDK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7	HHPRED-l	2hp0_A	0.138	0.529	1.144	threading_7	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------FTT----------KLAEKVVSAWKAKISQPALKAAQDGVIDTVAAAL-GGVTEH-----------SVQVALKYVAAGSGLWGSN-FDAAFVNG-AAHAIDFDDSF---PV-RGHPSSSLVPAIFAV-GEH-VGANGHNCLKSYVLGIEVVATLGRAVGKGHYLAGWHPTSTLGVFGATTAAALLLGADEEQLRNAWGIAASNSCGIIKNF-GT--TKP---HTGSAARNGVLSAWLS-QSFTGCQTVFDDAILA-YG-AQPGPELFNA-QFPGLYKKSSC-
8	HHPRED-g	2iaf_A	0.451	0.293	8.838	threading_8	---------------SSHTVGP-LAANAFLQLLEQKNLFDKTQRVKVELYGSLALTGKGHGTDKAILNGLENKAPE-------IPR-HEILDSNLLNLA-GKKEIPFHEATDFLFLQELLPKHSNG-RFSAFDGNALLIEQVYYSIGGGFITTEEDFDK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	PROSPECT2	1ejlI	0.115	0.802	1.216	threading_9	VEDIVKGIN---SNNLESQLQATQAARKLLDNIIRAGLIPKF----------VSFLGKTDCSPIWALTNIASGTSEQTKAVVDGGAIPAFIS---------------------------LLASPH-----------------------------AHI-------------SEQAVWALGNIAGDGSAFRDLVIKHGLALLAVPDLSTLACGYLRNLTWTLSNLCRNK----NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNEKKGVQLVKLLGATELPIVTPALRAIGNIVTGT--DEQTQKVIDAGALAVFPSLLTNPKTSNITAGRQDQIQQVVNHGLVPFLVKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEKIIQVILDAISNIFQAAEKLGETEKLSIMILDKIEALQRHENESVYKASLN--LIEKYFS
10	SAM-T99	2iqqA	0.429	0.308	5.522	threading_10	---------------SSHTVGP-LAANAFLQLLEQKNLFDKTQRVKVELYGSLALTGKGHGTDKAILNGLENKAPETVDPASIPRH--EILDSNLLNLAGKKEIPFHEATDFLFLQKELLPKHSNG-RFSAFDGNALLIEQVYYSIGGGFITTEEDFDK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.601 to 2vglB SCOP code=i.23.1.1	TM-score=0.611 to 2iqqA SCOP code=d.81.2.1	TM-score=0.591 to 1pieA SCOP code=d.14.1.5	TM-score=0.645 to 2iqqA SCOP code=d.81.2.1	TM-score=0.605 to 1wa5B SCOP code=a.118.1.1