Template-based Modeling Results for SYDP_ECOLI

Submitted Primary Sequence

>Length 181
MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIISTTEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLKPLL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIISTTEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLKPLL
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEECCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCEECCCCHHHHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIISTTEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLKPLL
4532012003200220020024235211113322202120011223210101023232331021013002020021012000010002020102302010020123300310121010101123313332100000034211000001320200012133442220021012013302324
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIISTTEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLKPLL
1	MUSTER	3ffvA	1.000	1.000	4.940	threading_1	MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIISTTEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLKPLL
2	SPARKS	3ffva	1.000	1.000	6.732	threading_2	MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIISTTEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLKPLL
3	PROSPECT2	3ffvA	1.000	1.000	4.373	threading_3	MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIISTTEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLKPLL
4	PPA-I	3ffvA	1.000	1.000	11.271	threading_4	MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIISTTEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLKPLL
5	HHPRED-l	3ffv_A	1.000	0.994	12.406	threading_5	MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIISTTEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLKPL-
6	HHPRED-g	3ffv_A	1.000	1.000	10.227	threading_6	MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIISTTEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLKPLL
7	SP3	3ffva	1.000	1.000	2.664	threading_7	MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIISTTEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLKPLL
8	SAM-T99	3ffvA	1.000	1.000	9.333	threading_8	MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIISTTEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLKPLL
9	MUSTER	3d5pA	0.136	0.691	0.773	threading_9	-------------------------------------------GEVIESKWYKKDGASSASIDDVEKLLNTTLPKQYKSFLLWS--NGGEGKLGDNYIYIWAIED------VIAYNHDYG-IQKYL---QKEYWAFGDGD-IGYILHLSDNSIYRVDLGITSIKYIAPSFDDFLGKAIYLN
10	SPARKS	3d5pa	0.136	0.691	0.832	threading_10	-------------------------------------------GEVIESKWYKKDGASSASIDDVEKLLNTTLPKQYKSFLLW--SNGGEGKLGD---NYIYIWAIEDVIAYNHD----YGIQKYLQ-KEYWAFGD---GDIGYILHLSDNSIYRVDLGDTSIKYIAPSFDDFLGKAIYLN

Predicted Tertiary Structure


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TM-score=0.597 to 2pagA TM-score=0.999 to native SCOP code=d.369.1.1	TM-score=0.597 to 2pagA TM-score=0.999 to native SCOP code=d.369.1.1	TM-score=0.597 to 2pagA TM-score=0.999 to native SCOP code=d.369.1.1	TM-score=0.597 to 2pagA TM-score=0.999 to native SCOP code=d.369.1.1	TM-score=0.597 to 2pagA TM-score=0.999 to native SCOP code=d.369.1.1

Experimental Structure

Download 3ffvA

SCOP code=d.369.1.1