Template-based Modeling Results for SUCD_ECOLI

Submitted Primary Sequence

>Length 289
MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK
CCEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEECEECCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEECCCCCEEECCCCCEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK
3110113402000100211201000210121112000000133212211101013103201321211000000002102200120031202000000310221212001110231111000110000011120100011121133020000020211011002001223100000000101111001000002103413302000000110221221001004332320000000010124021000000011113110321010023010200310220030022115
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK
1	MUSTER	1scuA	1.000	0.993	3.344	threading_1	-SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMG-AGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK
2	SPARKS	3mwdb	0.339	0.938	6.002	threading_2	STTLFSRHTKAIVWGQTRAVQGLDFDYVCSRDEPSVAAVYPFTGGHKEILIPVFKNA-DARKHPEVDVLINFASLRSAYDST-ETNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGILASKLYRPGSVAYVSRSGG-SNELNNIISRTTDGVYEGVAIGGDRYPGSTFDHVLRYQ--DTPGVKIVVLGEIGGTEEYKICRGIKERLTKPIVCWCIGTCATQASE-------------TAVAKNQALKEAGVFVPRSFDELGEIIQSVYE
3	PROSPECT2	1cqiA	0.997	0.990	4.331	threading_3	-SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKT--V
4	PPA-I	1scuA	1.000	0.993	4.291	threading_4	-SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMG-AGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK
5	HHPRED-l	1oi7_A	0.543	0.931	5.194	threading_5	-MILVNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRLIGGNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDHMKKPVVGFIGGR------------------VGTPESKLRAFAEAGIPVADTIDEIVELVKKAL-
6	HHPRED-g	2fp4_A	0.660	0.997	5.815	threading_6	KHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLRQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHKSKPVVSFIAGLTAPPGRRMG-AGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFE
7	SP3	3mwdb	0.336	0.938	6.425	threading_7	STTLFSRHTKAIVWGQTRAVQGLDFDYVCSRDEPSVAAVYPFTGGHKEILIPVFKNA-DARKHPEVDVLINFASLRSAYDST-ETNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGILASKLYRPGSVAYVSRSGG-SNELNNIISRTTDGVYEGVAIGGDRYPGSTFDHVLRYQ--DTPGVKIVVLGEIGGTEEYKICRGIKERLTKPIVCWCIGTCATQASET-------------AVAKNQALKEAGVFVPRSFDELGEIIQSVYE
8	SAM-T99	1eucA	0.663	0.997	5.803	threading_8	-HLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHKSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFE
9	MUSTER	1eucA	0.661	1.000	3.164	threading_9	KHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHKSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFE
10	SPARKS	3pffa	0.332	0.958	5.828	threading_10	STTLFSRHTKAIVWGMQTRQGMLDFDYVCSRDESVAAMVYPFTGGHKEILIPVFKNMADAMRKPEVDVLINFASLRSAYDSTMETMNAQIRTIAIIAEGIPEALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKEGLTKPIVCWCIGTCATMQ------------ASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYE

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.996 to 1scuA TM-score=0.999 to native SCOP code=c.2.1.8	TM-score=0.992 to 1scuA TM-score=0.996 to native SCOP code=c.2.1.8	TM-score=0.823 to 1oi7A TM-score=0.819 to native SCOP code=c.2.1.8	TM-score=0.988 to 1scuA TM-score=0.992 to native SCOP code=c.2.1.8	TM-score=0.996 to 1scuA TM-score=0.999 to native SCOP code=c.2.1.8

Experimental Structure

Download 1scuA

SCOP code=c.2.1.8