Template-based Modeling Results for SPED_ECOLI

Submitted Primary Sequence

>Length 264
MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYNANRLTEILSETCSIIGANILNIARQDYEPQGASVTILVSEEPVDPKLIDKTEHPGPLPETVVAHLDKSHICVHTYPESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDIVTIDYRVRGFTRDINGMKHFIDHEINSIQNFMSDDMKALYDMVDVNVYQENIFHTKMLLKEFDLKHYMFHTKPEDLTDSERQEITAALWKEMREIYYGRNMPAV
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYNANRLTEILSETCSIIGANILNIARQDYEPQGASVTILVSEEPVDPKLIDKTEHPGPLPETVVAHLDKSHICVHTYPESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDIVTIDYRVRGFTRDINGMKHFIDHEINSIQNFMSDDMKALYDMVDVNVYQENIFHTKMLLKEFDLKHYMFHTKPEDLTDSERQEITAALWKEMREIYYGRNMPAV
CCCCEECCCCCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHCCHHHHHHCEEEEECCCHHHHHHHHHHHHHCCCHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYNANRLTEILSETCSIIGANILNIARQDYEPQGASVTILVSEEPVDPKLIDKTEHPGPLPETVVAHLDKSHICVHTYPESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDIVTIDYRVRGFTRDINGMKHFIDHEINSIQNFMSDDMKALYDMVDVNVYQENIFHTKMLLKEFDLKHYMFHTKPEDLTDSERQEITAALWKEMREIYYGRNMPAV
553121111210120000000000002123113000100121120320130012002203010000010212230000000002232334223324322201310012014000000001222242100001000000001201122002000320312201011121112331320100111302001200133012101000010122000001000230202100032323202331133012101200220110331334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYNANRLTEILSETCSIIGANILNIARQDYEPQGASVTILVSEEPVDPKLIDKTEHPGPLPETVVAHLDKSHICVHTYPESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDIVTIDYRVRGFTRDINGMKHFIDHEINSIQNFMSDDMKALYDMVDVNVYQENIFHTKMLLKEFDLKHYMFHTKPEDLTDSERQEITAALWKEMREIYYGRNMPAV
1	MUSTER	2iiiA	0.244	0.451	1.011	threading_1	---AKTLG-----LHILADLYG-VDADK-------------IDRVEDIRELLEGAVKYANLTKISSHYYQFQPHGATGVVLLA----------------------------SHISIHTWPEHG--------LATVDVYTCGDPSKAYRADYIITQLNPKRIDKQVHERGIVEEESNQ---------------------------------------------------------------------------------------
2	PROSPECT2	1v93A	0.137	0.860	1.124	threading_2	MKLLK----ARRGPLFSFEFFP---PKDPEGEEALFRTLEELKARERSVAWAQRIQSLGLNPLAHLTVAGQSRSGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALDRVSVGGAAYPEGHPESE----------------SLEADLRHFKAKVEAGLDFAI--------------TQLFFNNAHYFGFLERARRAPILPGIMPVTSYRQLRRFTEVCGASIPGPLHQDDPKAVLEIGVEHAVRQVAEATRMVLERLGLRPA
3	PROSPECT2	1sqiA	0.101	0.898	1.110	threading_3	FEPLAYKGLETGSREVVSHVIKVLCSALNPWNKEMGDHLVKHGDGEDCEHIVQKARERGAKIVREPWVEEDKYGDTTHTLVEKINYTGRFLPGFEAPTYK------------------DTLLPKLPSCNLEIIDHIVGNQPDQEMESASEWYLKNLQFHRFWSVLRSIVVANYEESIKMPINEPASQIQEY--VDYNGGAGVQHIALRTEDIITTIRHLRERGM-------EFLAVPSSYYRLLRENLKMDVLEELKIKPMQDR
4	SPARKS	2iiia	0.252	0.451	2.368	threading_4	------------AKTLGLHILADLYGVDADK----------IDRVEDIRELLEGAVKYANLTKISSHYYQFQPHGATGVVLLA----------------------------SHISIHTWPEHG--------LATVDVYTCGDPSKAYRADYIITQLNPKRIDKQVHERGIVEEESNQ---------------------------------------------------------------------------------------
5	PROSPECT2	1tluA	0.293	0.439	1.645	threading_5	-------------KSLGRHLVAEFYECDRE----------VLDNVQLIEQEMKQAAYESGATIVTSTFHRFLPYGVSGVVVISE---------------------------SHLTIHTWPEYG--------YAAIDLFTCGEVDPWKAFEHLKKALKAKRVHVVEHERGRYDE------------------------------------------------------------------------------------------I
6	PPA-I	2iiiA	0.261	0.451	2.782	threading_6	------------AKTLGLHILADLYGVDA----------DKIDRVEDIRELLEGAVKYANLTKISSHYYQFQPHGATGVVLLA----------------------------SHISIHTWPEHG--------LATVDVYTCGDPSKAYRADYIITQLNPKRIDKQVHERGIVEEESNQ---------------------------------------------------------------------------------------
7	HHPRED-l	2iii_A	0.246	0.447	5.534	threading_7	-A-------KTLGLHILADLYGV-D---A----------DKIDRVEDIRELLEGAVKYANLTKISSHYYQFQPHGATGVVLLA----------------------------SHISIHTWPEHG--------LATVDVYTCGDSKAYRA-DYIITQLNPKRIDKQVHERGIVEEES--NQ-------------------------------------------------------------------------------------
8	HHPRED-g	2iii_A	0.228	0.432	5.770	threading_8	--------------------------AKTLGLHILADLYDKIDRVEDIRELLEGAVKYANLTKISSHYYQFQPHGATGVVLLA----------------------------SHISIHTWPEHG--------LATVDVYTCGDSKAYRA-DYIITQLNPKRIDKQVHERGIVEEES--NQ-------------------------------------------------------------------------------------
9	SP3	2iiia	0.252	0.451	2.234	threading_9	------------AKTLGLHILADLYGVD----------ADKIDRVEDIRELLEGAVKYANLTKISSHYYQFQPHGATGVVLLA----------------------------SHISIHTWPEHG--------LATVDVYTCGDPSKAYRADYIITQLNPKRIDKQVHERGIVEEESNQ---------------------------------------------------------------------------------------
10	SAM-T99	1vr7A	0.267	0.439	6.266	threading_10	-----------------------KSLGRHLVAEFYECDREVLDNVQLIEQE-KQAAYESGATIVTSTFHRFLPYGVSGVVVISE---------------------------SHLTIHTWPEYG--------YAAIDLFTCGEVDPWKAFEHLKKALKAKRVHVVEHERGRYDEIG-----------------------------------------------------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.638 to 1vr7A SCOP code=d.156.1.2	TM-score=0.729 to 1v93A SCOP code=c.1.23.1	TM-score=0.645 to 1vr7A SCOP code=d.156.1.2	TM-score=0.598 to 1t47A SCOP code=d.32.1.3	TM-score=0.642 to 1vr7A SCOP code=d.156.1.2