Template-based Modeling Results for SOXR_ECOLI

Submitted Primary Sequence

>Length 154
MEKKLPRIKALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCPLRNPGDRLGEEGTGARLLEDEQN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MEKKLPRIKALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCPLRNPGDRLGEEGTGARLLEDEQN
CCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MEKKLPRIKALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCPLRNPGDRLGEEGTGARLLEDEQN
5544234232202002004212021100100232100112223121110232002001002002502010210020021023242220310230023023201310210110131020002001211220101010121143121122233348
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MEKKLPRIKALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCPLRNPGDRLGEEGTGARLLEDEQN
1	MUSTER	2zhgA	0.992	0.786	3.233	threading_1	---------ALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAF-----GVTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCPLRNP-------------------
2	SPARKS	2zhga	0.992	0.786	3.900	threading_2	---------ALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAF-----GVTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCPLRNP-------------------
3	PROSPECT2	2zhgA	0.992	0.786	2.520	threading_3	---------ALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAF-----GVTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCPLRNP-------------------
4	PPA-I	2zhgA	0.992	0.786	4.340	threading_4	---------ALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAF-----GVTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCPLRNP-------------------
5	HHPRED-l	2zhg_A	1.000	0.786	4.358	threading_5	---------ALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAFGV-----TLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCPLRNP-------------------
6	HHPRED-g	2zhg_A	1.000	0.786	4.052	threading_6	---------ALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAFGV-----TLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCPLRNP-------------------
7	SP3	2zhga	0.992	0.786	3.792	threading_7	---------ALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAF-----GVTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCPLRNP-------------------
8	SAM-T99	2zhgA	0.950	0.786	4.775	threading_8	---------ALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAFGVTLSAKE-----WKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCPLRNP-------------------
9	MUSTER	1q05B	0.264	0.812	2.911	threading_9	-----------MNISDVAKITGLTSKAIRFYEEKGLVTPPRSENGYRTYTQQHLNELTLLRQARQVGFNLEESGELVNLFNDPQ--HSADVKRRTLEKVAEIERHIEELQSMRDQLLALANCPGDDSADCPIIENLSG----------------
10	SPARKS	1q05a	0.256	0.786	3.388	threading_10	-----------MNISDVAKITGLTSKAIRFYEEKGLVTPPRSENGYRTYTQQHLNELTLLRQARQVGFNLEESGELVNL-FNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALANACPG----CPIIENLS-----------------

Predicted Tertiary Structure


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TM-score=0.594 to 3d6yA TM-score=0.874 to native SCOP code=a.6.1.3	TM-score=0.594 to 3d6yA TM-score=0.874 to native SCOP code=a.6.1.3	TM-score=0.594 to 3d6yA TM-score=0.874 to native SCOP code=a.6.1.3	TM-score=0.594 to 3d6yA TM-score=0.874 to native SCOP code=a.6.1.3	TM-score=0.594 to 3d6yA TM-score=0.874 to native SCOP code=a.6.1.3

Experimental Structure

Download 2zhgA

SCOP code=a.6.1.3