Template-based Modeling Results for SEQA_ECOLI

Submitted Primary Sequence

>Length 181
MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI
CCCEEECHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCEEECCCHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI
5442212230020012104302320220022003022223222222332422232223232242233212102200212212311310110010001002011310130023022221010022121004214323133032010000002122210100220032130223102301223
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI
1	MUSTER	3fmtA	0.988	0.895	3.608	threading_1	MKTIEVDDELYSYIASHTKHIGESRSDILRRMLKFSAASQK-------------------PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI
2	SPARKS	1lrra	1.000	0.652	2.756	threading_2	---------------------------------------------------------------TIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI
3	PROSPECT2	1lrra	1.000	0.652	2.496	threading_3	---------------------------------------------------------------TIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI
4	PPA-I	3fmtA	0.988	0.895	4.957	threading_4	MKTIEVDDELYSYIASHTKHIGESRSDILRRMLKFSAASQK-------------------PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI
5	HHPRED-l	3fmt_A	0.994	0.890	9.393	threading_5	MKTIEVDDELYSYIASHTKHIGESRSDILRRMLKFSAASQ-------------------KPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT-
6	HHPRED-g	3fmt_A	0.994	0.895	7.881	threading_6	MKTIEVDDELYSYIASHTKHIGESRSDILRRMLKFSAASQ-------------------KPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI
7	SP3	1lrra	1.000	0.652	1.550	threading_7	---------------------------------------------------------------TIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI
8	SAM-T99	3fmtA	0.994	0.895	9.845	threading_8	MKTIEVDDELYSYIASHTKHIGESRSDILRRMLKFSAASQ-------------------KPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI
9	MUSTER	2iu1A	0.164	0.878	0.622	threading_9	ERTIEERNILFDFVKKKKEEIDSSDKEIVAEAERLDVKAMGPLVLTEVLFNEK-----------IREQIKKYRRHFLRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKE---MYDADEEEVIISWSEKASKKYVSK--------ELAKEIRVKAEPFIKWLEDEDENIEVVYSKL
10	SPARKS	2fq4a	0.139	0.873	0.591	threading_10	-RNIETQKAILSASYELLLESGFTVDKIAERA-KVSKAAAVVDGFLSAAAARLPVPDTGSALNDILIHATSLANFLISRE--------GTIINELVGEGQFDSKLAEEYRVRYFQPRRLQAKQLLEKGIKRG------ELKE-------NLDIELSIDLIYGPIFYRKLDDSYVHDLVINA

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.413 to 1lq7A TM-score=0.827 to native SCOP code=k.9.1.1	TM-score=0.413 to 1lq7A TM-score=0.827 to native SCOP code=k.9.1.1	TM-score=0.402 to 1dgnA TM-score=0.728 to native SCOP code=a.77.1.3	TM-score=0.402 to 1dgnA TM-score=0.728 to native SCOP code=a.77.1.3	TM-score=0.413 to 1lq7A TM-score=0.827 to native SCOP code=k.9.1.1

Experimental Structure

Download 3fmtA

SCOP code=d.2.1.9