Template-based Modeling Results for SECB_ECOLI

Submitted Primary Sequence

>Length 155
MSEQNNTEMTFQIQRIYTKDISFEAPNAPHVFQKDWQPEVKLDLDTASSQLADDVYEVVLRVTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQQQAGEGTEEHQDA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSEQNNTEMTFQIQRIYTKDISFEAPNAPHVFQKDWQPEVKLDLDTASSQLADDVYEVVLRVTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQQQAGEGTEEHQDA
CCCCCCCCCCEEEEEEEEEEEEEECCCCCHHHCCCCCCCEEEEEECCCEECCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSEQNNTEMTFQIQRIYTKDISFEAPNAPHVFQKDWQPEVKLDLDTASSQLADDVYEVVLRVTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQQQAGEGTEEHQDA
54433333220101100010000202202311243221201010112123133210100020202022332100001010000010220312101300002002000100120011002303011010120102100121132213322343444
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSEQNNTEMTFQIQRIYTKDISFEAPNAPHVFQKDWQPEVKLDLDTASSQLADDVYEVVLRVTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQQQAGEGTEEHQDA
1	MUSTER	1fx3B	0.558	0.948	4.588	threading_1	-------QPVLQIQRIYVKDVSFEAPNLPHIFQQEWKPKLGFDLSTETTQVGDDLYEVVLNISVETTLEDSVAFICEVKQAGVFTISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVNRGTFPALNLSPVNFDALFVEYMNRQQAENAEEKSE-
2	SPARKS	1fx3a	0.567	0.910	5.573	threading_2	-------QPVLQIQRIYVKDVSFEAPNLPHIFQQEWKPKLGFDLSTETTQVGDDLYEVVLNISVETTLEGDVAFICEVKQAGVFTISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVNRGTFPALNLSPVNFDALFVEYMNRQQAEN-------
3	PROSPECT2	1qynA	1.000	0.865	2.769	threading_3	M--------TFQIQRIYTKDISFEAPNAPHVFQKDWQPEVKLDLDTASSQLADDVYEVVLRVTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQ-------------
4	PPA-I	1fx3B	0.558	0.948	9.244	threading_4	-------QPVLQIQRIYVKDVSFEAPNLPHIFQQEWKPKLGFDLSTETTQVGDDLYEVVLNISVETTLEDSVAFICEVKQAGVFTISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVNRGTFPALNLSPVNFDALFVEYMNRQQAENAEEKSE-
5	HHPRED-l	1qyn_A	1.000	0.865	9.019	threading_5	--------MTFQIQRIYTKDISFEAPNAPHVFQKDWQPEVKLDLDTASSQLADDVYEVVLRVTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQ-------------
6	HHPRED-g	1qyn_A	1.000	0.865	8.000	threading_6	--------MTFQIQRIYTKDISFEAPNAPHVFQKDWQPEVKLDLDTASSQLADDVYEVVLRVTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQ-------------
7	SP3	1fx3a	0.567	0.910	5.090	threading_7	-------QPVLQIQRIYVKDVSFEAPNLPHIFQQEWKPKLGFDLSTETTQVGDDLYEVVLNISVETTLSGDVAFICEVKQAGVFTISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVNRGTFPALNLSPVNFDALFVEYMNRQQAEN-------
8	SAM-T99	1qynD	1.000	0.865	6.949	threading_8	----------FQIQRIYTKDISFEAPNAPHVFQKDWQPEVKLDLDTASSQLADDVYEVVLRVTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQQQ-----------
9	MUSTER	1qynD	1.000	0.877	4.443	threading_9	--------MTFQIQRIYTKDISFEAPNAPHVFQKDWQPEVKLDLDTASSQLADDVYEVVLRVTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQQQ-----------
10	SPARKS	2hnga	0.149	0.735	0.734	threading_10	--------ANLKREQEFVSQYHFDARN-FEWENENGAPETKVDVNFQLLQHDQENQVTSLIVILSFIVFDK--FVISGTISQVNHIDGLNQEEVETLA-----RPCLNLNRLTYEVTEIALDLPGINLEF-------------------------

Predicted Tertiary Structure


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TM-score=0.927 to 1fx3B TM-score=0.940 to native SCOP code=d.33.1.1	TM-score=0.948 to 1fx3B TM-score=0.946 to native SCOP code=d.33.1.1	TM-score=0.913 to 1fx3B TM-score=0.952 to native SCOP code=d.33.1.1	TM-score=0.902 to 1qynD TM-score=0.959 to native SCOP code=d.33.1.1	TM-score=0.927 to 1fx3B TM-score=0.940 to native SCOP code=d.33.1.1

Experimental Structure

Download 1qynD

SCOP code=d.33.1.1