Template-based Modeling Results for SDHM_ECOLI

Submitted Primary Sequence

>Length 455
MISVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIARNLLKDVTRVVVDVYGSLSLTGKGHHTDIAIIMGLAGNLPDTVDIDSIPSFIQDVNTHGRLMLANGQHEVEFPVDQCMNFHADNLSLHENGMRITALAGDKVVYSQTYYSIGGGFIVDEEHFGQQDSAPVEVPYPYSSAADLQKHCQETGLSLSGLMMKNELALHSKEELEQHLANVWEVMRGGIERGISTEGVLPGKLRVPRRAAALRRMLVSQDKTTTDPMAVVDWINMFALAVNEENAAGGRVVTAPTNGACGIIPAVLAYYDKFIREVNANSLARYLLVASAIGSLYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGASPAQVCIAAEIAMEHNLGLTCDPVAGQVQVPCIERNAIAAVKAVNAARMALRRTSEPRVCLDKVIETMYETGKDMNAKYRETSRGGLAMKIVACD
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MISVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIARNLLKDVTRVVVDVYGSLSLTGKGHHTDIAIIMGLAGNLPDTVDIDSIPSFIQDVNTHGRLMLANGQHEVEFPVDQCMNFHADNLSLHENGMRITALAGDKVVYSQTYYSIGGGFIVDEEHFGQQDSAPVEVPYPYSSAADLQKHCQETGLSLSGLMMKNELALHSKEELEQHLANVWEVMRGGIERGISTEGVLPGKLRVPRRAAALRRMLVSQDKTTTDPMAVVDWINMFALAVNEENAAGGRVVTAPTNGACGIIPAVLAYYDKFIREVNANSLARYLLVASAIGSLYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGASPAQVCIAAEIAMEHNLGLTCDPVAGQVQVPCIERNAIAAVKAVNAARMALRRTSEPRVCLDKVIETMYETGKDMNAKYRETSRGGLAMKIVACD
CCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MISVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIARNLLKDVTRVVVDVYGSLSLTGKGHHTDIAIIMGLAGNLPDTVDIDSIPSFIQDVNTHGRLMLANGQHEVEFPVDQCMNFHADNLSLHENGMRITALAGDKVVYSQTYYSIGGGFIVDEEHFGQQDSAPVEVPYPYSSAADLQKHCQETGLSLSGLMMKNELALHSKEELEQHLANVWEVMRGGIERGISTEGVLPGKLRVPRRAAALRRMLVSQDKTTTDPMAVVDWINMFALAVNEENAAGGRVVTAPTNGACGIIPAVLAYYDKFIREVNANSLARYLLVASAIGSLYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGASPAQVCIAAEIAMEHNLGLTCDPVAGQVQVPCIERNAIAAVKAVNAARMALRRTSEPRVCLDKVIETMYETGKDMNAKYRETSRGGLAMKIVACD
54101110310000100100000100220021023232233122010100000020031220010001001221132121310220021022312011231333031223300001231122031001000012332111000000021100123312333212231212110011013103422121000111122211233102210110020020013321223220113131223001122122233322222110000000000001222010110000121110000000000013204312120002000000000000311111001111021100000000000001012121200010011003010001011021102000011000000100000100122123130102200200120033012102111311002322214
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MISVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIARNLLKDVTRVVVDVYGSLSLTGKGHHTDIAIIMGLAGNLPDTVDIDSIPSFIQDVNTHGRLMLANGQHEVEFPVDQCMNFHADNLSLHENGMRITALAGDKVVYSQTYYSIGGGFIVDEEHFGQQDSAPVEVPYPYSSAADLQKHCQETGLSLSGLMMKNELALHSKEELEQHLANVWEVMRGGIERGISTEGVLPGKLRVPRRAAALRRMLVSQDKTTTDPMAVVDWINMFALAVNEENAAGGRVVTAPTNGACGIIPAVLAYYDKFIREVNANSLARYLLVASAIGSLYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGASPAQVCIAAEIAMEHNLGLTCDPVAGQVQVPCIERNAIAAVKAVNAARMALRRTSEPRVCLDKVIETMYETGKDMNAKYRETSRGGLAMKIVACD
1	PROSPECT2	1gw5b	0.098	0.943	1.387	threading_1	VKKVIAAMTVGCMQTDNLEL--KKLVYLYLMNYAKSQPDMAIMAVNS----FVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKHDINAQMVEDQGFLDSLRDLIADSNPMVVAN------------------AVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCNYNPKDDREAQSICERVSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVVDFVRKAVRAIGRCAIKVEQSAERCVST--LLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLVKLFLKKPSET
2	SPARKS	2iafa	0.407	0.297	2.931	threading_2	---------------SSHTVGPL-AANAFLQLLEQKNLFDKTQRVKVELYGSLALTGKGHGTDKAILNGLENKAPESIPRH-------EILDSNLLNL-AGKKEIPFHEATDFLFQKELLPKHSNGRFSAFDGNANLLIEQVYYSIGGGFITTEEDFDK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	1jdha	0.119	0.866	1.228	threading_3	AVELTKLLNSKKEASRHAIMRSPQMVSAIVRTMQN----TNDVETARCTAGTLHNLSHHREGLLAILVKMLGSPVDSVLFYAITTLHNLLLHQEGA--------------KMAVRLAGGLQKKTN------------------------------------------VKFLAITTDCLQILAYGNQESKLIILANIMRTYTYEKLLWTTSRVLKVLPAIVEAGGMGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVTCAAGILSNLTCNNYKNKMMVC-QVGGIEALVRTVLRAGDREDITEPAICALRHLMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLAHQDTQFVEGVRMEEIVEGCTGALHILVHNRIVIRGLNPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPELLHSR
4	PPA-I	2iqqA	0.443	0.308	1.224	threading_4	---------------SSHTVGP-LAANAFLQLLEQKNLFDKTQRVKVELYGSLALTGKGHGTDKAILNGLENKAPETVDPASIPR--HEILDSNLLNLA-GKKEIPFHEATDFLFLKELLPKHSNGRFSAFDGNANLLIEQVYYSIGGGFITTEEDFDK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	PROSPECT2	1ee4a	0.102	0.756	1.212	threading_5	QEQMTQQLN-----SDDMQEQ-LSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMAWALTNIASGT--------SAQTKVVVDAD------------------------------------------------------------------------------AVPLFIQLLYTGSVEVKEQAIWGNVAGDSTDYRDYVLQCAMEPILGLFN---------SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTDACWAISYLSDGPQEAIQAIPKRLVELLSHESTLVQTPALRAVGNIVQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID----------ANLIPPLVKLDKTKKEACWAISNADIIRYLVSQGCADNRIIEVTLDALENILKMGEADKEARGLNINENFIEKAG
6	HHPRED-l	2iaf_A	0.444	0.292	9.572	threading_6	---------------SSHTVGP-LAANAFLQLLEQKNLFDKTQRVKVELYGSLALTGKGHGTDKAILNGLENKAPE-------IPR-HEILDSNLLNLA-GKKEIPFHEATDFLFLKELLPKHSNG-RFSAFDGNNLLIEQVYYSIGGGFITTEEDFDK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7	HHPRED-l	2hp0_A	0.149	0.530	1.280	threading_7	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------FTT----------KLAEKVVSAWKAKISQPALKAAQDGVIDTVAAAL-GGVTEH-----------SVQVALKYVAATGGLQRSN-FDAAFVNG-AAHAIDFDDSFP---V-RGHPSSSLVPAIFAV-GEHV-GANGHNCLKSYVLGIEVVATLGRAVGKGHYLAGWHPTSTLGVFGATTAAALLLGADEEQLRNAWGIAASNSCGIIKNF-GT--TKP---HTGSAARNGVLSAWLS-QSFTGCQTVFDDAILA-YG-AQPGPELFNA-IAPGLYKKSPSC-
8	HHPRED-g	2iaf_A	0.444	0.292	8.795	threading_8	---------------SSHTVGP-LAANAFLQLLEQKNLFDKTQRVKVELYGSLALTGKGHGTDKAILNGLENKAPE-------IPR-HEILDSNLLNLA-GKKEIPFHEATDFLFLQELLPKHSNG-RFSAFDGNNLLIEQVYYSIGGGFITTEEDFDK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	PROSPECT2	1ejlI	0.140	0.782	1.205	threading_9	GTSVEDIVKGINSNNLESQLQATQAARKLLDNIIRAGLIPKF----------VSFLGKTDCSPIWALTNIASGTSEQTKAVVDGGAIPAFIS---------------------------LLASPH------------------------------------------AHISEQAVWALGNIAGDGSAFRDLVIKHGLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP----LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNEKKGVQLVKLLGATELPIVTPALRAIGNIVTGT--DEQTQKVIDAGALAVFPSLLTNPKTSNITAGRQDQIQQVVNHGLVPFLVKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEKIIQVILDAISNIFQAAEKLGETEKLSIMIEESVYKASLNLIEKY--------------FS
10	SP3	2iafa	0.415	0.297	2.950	threading_10	---------------SSHTVGPL-AANAFLQLLEQKNLFDKTQRVKVELYGSLALTGKGHGTDKAILNGLENKAPESIPRH-------EILDSNLLNLA-GKKEIPFHEATDFLFLQELLPKHSNGRFSAFDGNANLLIEQVYYSIGGGFITTEEDFDK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.742 to 2vglB SCOP code=i.23.1.1	TM-score=0.608 to 2iqqA SCOP code=d.81.2.1	TM-score=0.619 to 1wa5B SCOP code=a.118.1.1	TM-score=0.645 to 2iqqA SCOP code=d.81.2.1	TM-score=0.675 to 1wa5B SCOP code=a.118.1.1