Template-based Modeling Results for SDHL_ECOLI

Submitted Primary Sequence

>Length 454
MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDSVTRVAVDVYGSLSLTGKGHHTDIAIIMGLAGNEPATVDIDSIPGFIRDVEERERLLLAQGRHEVDFPRDNGMRFHNGNLPLHENGMQIHAYNGDEVVYSKTYYSIGGGFIVDEEHFGQDAANEVSVPYPFKSATELLAYCNETGYSLSGLAMQNELALHSKKEIDEYFAHVWQTMQACIDRGMNTEGVLPGPLRVPRRASALRRMLVSSDKLSNDPMNVIDWVNMFALAVNEENAAGGRVVTAPTNGACGIVPAVLAYYDHFIESVSPDIYTRYFMAAGAIGALYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGGSPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPCIERNAIASVKAINAARMALRRTSAPRVSLDKVIETMYETGKDMNAKYRETSRGGLAIKVQCD
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDSVTRVAVDVYGSLSLTGKGHHTDIAIIMGLAGNEPATVDIDSIPGFIRDVEERERLLLAQGRHEVDFPRDNGMRFHNGNLPLHENGMQIHAYNGDEVVYSKTYYSIGGGFIVDEEHFGQDAANEVSVPYPFKSATELLAYCNETGYSLSGLAMQNELALHSKKEIDEYFAHVWQTMQACIDRGMNTEGVLPGPLRVPRRASALRRMLVSSDKLSNDPMNVIDWVNMFALAVNEENAAGGRVVTAPTNGACGIVPAVLAYYDHFIESVSPDIYTRYFMAAGAIGALYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGGSPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPCIERNAIASVKAINAARMALRRTSAPRVSLDKVIETMYETGKDMNAKYRETSRGGLAIKVQCD
CCCHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCEEECCCCCCEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEEEHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDSVTRVAVDVYGSLSLTGKGHHTDIAIIMGLAGNEPATVDIDSIPGFIRDVEERERLLLAQGRHEVDFPRDNGMRFHNGNLPLHENGMQIHAYNGDEVVYSKTYYSIGGGFIVDEEHFGQDAANEVSVPYPFKSATELLAYCNETGYSLSGLAMQNELALHSKKEIDEYFAHVWQTMQACIDRGMNTEGVLPGPLRVPRRASALRRMLVSSDKLSNDPMNVIDWVNMFALAVNEENAAGGRVVTAPTNGACGIVPAVLAYYDHFIESVSPDIYTRYFMAAGAIGALYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGGSPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPCIERNAIASVKAINAARMALRRTSAPRVSLDKVIETMYETGKDMNAKYRETSRGGLAIKVQCD
5411100020000010010000010022002101421223212201010000002113122001000100112212212131021002103332201113132201123320010122212204200000001233210110000021010001221123213321120213102100210332211100000112221123310121012002002101331032311021213122200101210222332222111000000000000123201101000012111000000000001220321112100200000000000021111100111102110000000000000101211130001001000301000101112110200001100000020000010012212213010220020012003201210211131000020115
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDSVTRVAVDVYGSLSLTGKGHHTDIAIIMGLAGNEPATVDIDSIPGFIRDVEERERLLLAQGRHEVDFPRDNGMRFHNGNLPLHENGMQIHAYNGDEVVYSKTYYSIGGGFIVDEEHFGQDAANEVSVPYPFKSATELLAYCNETGYSLSGLAMQNELALHSKKEIDEYFAHVWQTMQACIDRGMNTEGVLPGPLRVPRRASALRRMLVSSDKLSNDPMNVIDWVNMFALAVNEENAAGGRVVTAPTNGACGIVPAVLAYYDHFIESVSPDIYTRYFMAAGAIGALYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGGSPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPCIERNAIASVKAINAARMALRRTSAPRVSLDKVIETMYETGKDMNAKYRETSRGGLAIKVQCD
1	PROSPECT2	1gw5b	0.102	0.885	1.325	threading_1	VKKVIAAMTVGCMQTDNLEL--KKLVYLYLMNYAKSQCEDPNPLIRALAVRTMGCIRVDKITEYLCVAKLHDINAQMVEDQGFLDSLRD------------------------------LIADSN------------------PMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCNYNPKDDREAQSICERVSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVVDFVRKAVRAIGRCAIKVEQSAERCVST--LLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTKPSETQELVQFV
2	SPARKS	2iafa	0.415	0.297	3.001	threading_2	---------------SSHTVGPL-AANAFLQLLEQKNLFDKTQRVKVELYGSLALTGKGHGTDKAILNGLENKAPESIPRH-------EILDSNLLNL-AGKKEIPFHEATDFLFQKELLPKHSNGRFSAFDGNANLLIEQVYYSIGGGFITTEEDFDK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	2aj4A	0.126	0.841	1.245	threading_3	VISIIKKFYVTIDPSVSDWSNYFKCGSFLKKLAPERFASAPLAGLQVFCEGDVP-TGSGLSSSAAFVVKANMGPGYHMSKQNLMRITVVAEHYVGVNCGEEDHALYVEFKPQLKATPFKFPQLKNHISFVIANTLV--------------------------VSNKFETAPTNYNLRVVEVT-----TAANVLAATYGVVLLNK-----GNLRDFMNVYYARYHNISTPWNGDIESGTKMLVLVEESLANKKQGFSVDDVAQSLNCSREEFTRDYLTTS---PVRFQVLKLYQRA-------------KHVYSESLRVLKAVKLMTTFTADEDFFK-----QFGALMNESQASCDKLYECSCPEIDKICSIALSNGSYLTGAGWGGCTLVPGGPNGNIEKVKEALANEFYKVKYPKIT-------------DAELENAIIVSKPALGSCLYE-L
4	PPA-I	2iqqA	0.450	0.308	1.325	threading_4	---------------SSHTVGP-LAANAFLQLLEQKNLFDKTQRVKVELYGSLALTGKGHGTDKAILNGLENKAPETVDPASIPR--HEILDSNLLNLA-GKKEIPFHEATDFLFLKELLPKHSNGRFSAFDGNANLLIEQVYYSIGGGFITTEEDFDK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	PROSPECT2	1ee4a	0.109	0.749	1.210	threading_5	QEQMTQQLN-----SDDMQEQ-LSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMAWALTNIASGT--------SAQTKVVVDADAV------------------------------------------------------------------------------PLFIQLLYTGSVEVKEQAIWGNVAGDSTDYRDYVLQCAMEPILGLFN---------SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDSDGPRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIKEACWTISNITAGNTEQIQAVIDANLKTKKEACWAISNASSGGLQRPDIIRYLVSPLCDL---LEIAD-------NRIIEVTLDALENILKMGEADKEARGLNINENAGMEKIFNCQQNENDKIYEKAYKIIE---TYF
6	HHPRED-l	2iaf_A	0.444	0.293	9.686	threading_6	---------------SSHTVGP-LAANAFLQLLEQKNLFDKTQRVKVELYGSLALTGKGHGTDKAILNGLENKAPE-------IPR-HEILDSNLLNLA-GKKEIPFHEATDFLFLQELLPKHSNG-RFSAFDGNALLIEQVYYSIGGGFITTEEDFDK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7	MUSTER	2iqqA	0.450	0.308	0.727	threading_7	---------------SSHTVGP-LAANAFLQLLEQKNLFDKTQRVKVELYGSLALTGKGHGTDKAILNGLENKAPETVDPASIPR--HEILDSNLLNLA-GKKEIPFHEATDFLFLQELLPKHSNGRFSAFDGNANLLIEQVYYSIGGGFITTEEDFDK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8	HHPRED-g	2iaf_A	0.444	0.293	8.797	threading_8	---------------SSHTVGP-LAANAFLQLLEQKNLFDKTQRVKVELYGSLALTGKGHGTDKAILNGLENKAPE-------IPR-HEILDSNLLNLA-GKKEIPFHEATDFLFLQELLPKHSNG-RFSAFDGNALLIEQVYYSIGGGFITTEEDFDK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	SP3	2bkub	0.103	0.980	0.420	threading_9	ELMKIMVDNTGAEQPENVKRASLLALGYMCESA--DALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLKYYTFMKPYMEQALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNIKDVVPNLLNWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSV-------AESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPGLIGAANRDNEFNARASAFSALTTMVEYATDTVAETSASISTFKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKG
10	SAM-T99	2iqqA	0.436	0.308	5.515	threading_10	---------------SSHTVGP-LAANAFLQLLEQKNLFDKTQRVKVELYGSLALTGKGHGTDKAILNGLENKAPETVDPASIP--RHEILDSNLLNLAGKKEIPFHEATDFLFLQKELLPKHSNG-RFSAFDGNANLLEQVYYSIGGGFITTEEDFDK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.650 to 2vglB SCOP code=i.23.1.1	TM-score=0.612 to 2iqqA SCOP code=d.81.2.1	TM-score=0.604 to 1pieA SCOP code=d.14.1.5	TM-score=0.645 to 2iqqA SCOP code=d.81.2.1	TM-score=0.589 to 1wa5B SCOP code=a.118.1.1