Template-based Modeling Results for SBMA_ECOLI

Submitted Primary Sequence

>Length 406
MFKSFFPKPGTFFLSAFVWALIAVIFWQAGGGDWVARITGASGQIPISAARFWSLDFLIFYAYYIVCVGLFALFWFIYSPHRWQYWSILGTALIIFVTWFLVEVGVAVNAWYAPFYDLIQTALSSPHKVTIEQFYREVGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMANWQQLRHIEGAAQRVQEDTMRFASTLENMGVSFINAIMTLIAFLPVLVTLSAHVPELPIIGHIPYGLVIAAIVWSLMGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDATRATPPTVRELFSAVRKNYFRLYFHYMYFNIARILYLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFGQVRGAFQYLINSWTTLVELMSIYKRLRSFEHELDGDKIQEVTHTLS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MFKSFFPKPGTFFLSAFVWALIAVIFWQAGGGDWVARITGASGQIPISAARFWSLDFLIFYAYYIVCVGLFALFWFIYSPHRWQYWSILGTALIIFVTWFLVEVGVAVNAWYAPFYDLIQTALSSPHKVTIEQFYREVGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMANWQQLRHIEGAAQRVQEDTMRFASTLENMGVSFINAIMTLIAFLPVLVTLSAHVPELPIIGHIPYGLVIAAIVWSLMGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDATRATPPTVRELFSAVRKNYFRLYFHYMYFNIARILYLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFGQVRGAFQYLINSWTTLVELMSIYKRLRSFEHELDGDKIQEVTHTLS
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MFKSFFPKPGTFFLSAFVWALIAVIFWQAGGGDWVARITGASGQIPISAARFWSLDFLIFYAYYIVCVGLFALFWFIYSPHRWQYWSILGTALIIFVTWFLVEVGVAVNAWYAPFYDLIQTALSSPHKVTIEQFYREVGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMANWQQLRHIEGAAQRVQEDTMRFASTLENMGVSFINAIMTLIAFLPVLVTLSAHVPELPIIGHIPYGLVIAAIVWSLMGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDATRATPPTVRELFSAVRKNYFRLYFHYMYFNIARILYLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFGQVRGAFQYLINSWTTLVELMSIYKRLRSFEHELDGDKIQEVTHTLS
5442122323211100000010011112210231112011121312110010001100000000000000000001011323120000000000000000100000000100110010002012233312032002000000000000000100110000000020020002100110232241300233032101200210120001002000100000000020113023121113121000000000000000011101231200213122111001200010222223022310220022013001300001000100110010001000000000000112020020110010002001001100200210020000031022012103233233223325
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MFKSFFPKPGTFFLSAFVWALIAVIFWQAGGGDWVARITGASGQIPISAARFWSLDFLIFYAYYIVCVGLFALFWFIYSPHRWQYWSILGTALIIFVTWFLVEVGVAVNAWYAPFYDLIQTALSSPHKVTIEQFYREVGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMANWQQLRHIEGAAQRVQEDTMRFASTLENMGVSFINAIMTLIAFLPVLVTLSAHVPELPIIGHIPYGLVIAAIVWSLMGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDATRATPPTVRELFSAVRKNYFRLYFHYMYFNIARILYLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFGQVRGAFQYLINSWTTLVELMSIYKRLRSFEHELDGDKIQEVTHTLS
1	MUSTER	2onjA1	0.134	0.751	1.036	threading_1	---------------------------------------------------------------------MIKRYLQFVKPYKYRIFATIIVGIIKFG------IPMLIPLLIKYAIDGVITTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVK-------------LTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHER--AIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE-----DYD------
2	SPARKS	2yl4a	0.125	0.791	2.093	threading_2	------------------------------------------------------------------GLPEARKLLGLAYPE----RRRLAAAVGFLTMSSVISM--SAPFFLGKIIDVIYTNPTVDYSDNTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSP-------------NLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNE
3	PROSPECT2	3a6pA1	0.065	0.906	1.814	threading_3	------AMDQVNALCEQLVKAVTVMMDPNSTQR------------------YRLEALKFCEEFKEKCPICVPCGLRLAEKTQ--VAIVRHFGLQILEHVVKFRWNGEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLP--PQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQV----------KTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNEQELQLGAKLEDRKPLMVLFGDVAMHYILSEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFQFLRSSTQMTWGALFLLLAIIPKYLRASMTNLVKMGFPSKTDSP
4	PPA-I	2onjA1	0.117	0.756	2.452	threading_4	---------------------------------------------------------------------MIKRYLQFVKP------YKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVK-------------LTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYD-----------
5	HHPRED-l	3b5x_A	0.109	0.771	3.151	threading_5	----------------------------------------------------------W---------QTFKRLWTYIRLY--KAGLVVSTIALVINAAADTY----MISLLKPLLDEGFG---N---AESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSW-------------QLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEERV-
6	HHPRED-g	3b5x_A	0.105	0.773	3.527	threading_6	-------------------------------------------------------------------WQTFKRLWTYIRLYKAG------LVVSTIALVINAAADTYMISLLKPLLDEGFGNA------ESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQL-------------SLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEERVN
7	SP3	3g5ua	0.097	0.941	1.048	threading_7	LVR----NPKILESEAVVQAALDKAR--EGNADVIAGF----DGGVINHDELMREKGIYFKLVMTVPPASFWRILKLNSTEWPY------FVVGIFCAIINGGLQPAFSVIFSKVVGVF--TNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTG------IIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKDSYSTQGLKPNMLE
8	SAM-T99	2y2zA	0.148	0.350	0.815	threading_8	------------------------MVDEVIGETRLPDRPGPDWRAALTLAANEKRALWLRHPWLATAWRNGHPVWGP--NSLRQQEFVLGTLGVFDLQ--------------------------------VDELLSLIGLYNGYVESFVRNEVGWLEEARRTKVDMREWMSGPYAQQLVDSGPHMGPDQR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FRSGLERLLD------------------
9	MUSTER	1is2A2	0.103	0.911	0.916	threading_9	ASATFNPEPENTRRRREIENLILN-----PDFQKLTYGTMVFVRSFLVGNAAQSLSKACTIAIRYSAV---RQSEIKQSEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYMKETYLRINESIGQ-GDLSELPELHALTAGLKAFTTWTANAGIEECRMAC-----HSSGIPNIYVTFTPACTFEG-------ENTVMMLQTARFLMKIYDQVRS----------VGGMVSYLNDLPSVDINLEGLTEAYKLRAARLVEIAAKNLQTHVSHRKSKEVAWNLTSVDLVRASEAHCHYVVVKVFSDKLKAVQAVLRNLCLLYSLYGISQKGGDFLEGSIITGAQLSQ-----VNARILELLTLIRPNAVALVDAFDKDMTLGSVLNVYENLFEWAKKSPLNKTEVHES
10	SPARKS	2hyda	0.121	0.776	1.993	threading_10	---------------------------------------------------------------------MIKRYLQFVKPY------KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGV---INNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHRFYANVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLA-------------ALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIE

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.780 to 2onjA SCOP code=c.37.1.12	TM-score=0.787 to 2onjA SCOP code=c.37.1.12	TM-score=0.588 to 2onjA SCOP code=c.37.1.12	TM-score=0.609 to 1u6gC SCOP code=a.118.1.2	TM-score=0.811 to 2onjA SCOP code=c.37.1.12