Template-based Modeling Results for RUTD_ECOLI

Submitted Primary Sequence

>Length 266
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMPYGGHACNVTDPETFNALLLNGLASLLHHREAAL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMPYGGHACNVTDPETFNALLLNGLASLLHHREAAL
CEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHCHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHCHHHHHHHHHHHHHHHCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMPYGGHACNVTDPETFNALLLNGLASLLHHREAAL
21010002322411000000000010100120022013200000011210021232222211022001001300210203200000001000000100120021010000000113132203200210121122211310021001101113112232231101101111213122100200100231100310330300000000231220112001101310230100002300000112103100300120022023343234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMPYGGHACNVTDPETFNALLLNGLASLLHHREAAL
1	MUSTER	3v48A	0.966	0.981	2.624	threading_1	HKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIA-QAAELHQALVAAGIEHYAVVGHALGALVGQLALDY-PASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADW-AARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQK--VPYGGHACNVTDPETFNALLLNGLASLLHHREAAL
2	SPARKS	3v48a	0.977	0.981	3.046	threading_2	HKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYS-IAQAAELHQALVAAGIEHYAVVGHALGALVG-QLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWA-ARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQK--VPYGGHACNVTDPETFNALLLNGLASLLHHREAAL
3	PROSPECT2	3v48A	0.946	0.981	3.843	threading_3	HKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNP-DTLAEDYSIAQAAELHQALVAAGIEHYAVVGHALGALVGQ-LALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADW-AARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQK--VPYGGHACNVTDPETFNALLLNGLASLLHHREAAL
4	PPA-I	3v48A	0.954	0.981	2.565	threading_4	HKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYS-IAQAAELHQALVAAGIEHYAVVGHALGALVGQLALDY-PASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWA-ARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQK--VPYGGHACNVTDPETFNALLLNGLASLLHHREAAL
5	HHPRED-l	3v48_A	1.000	0.970	1.663	threading_5	-KLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQ-AAELHQALVAAGIEHYAVVGHALGALVG-QLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADW-AARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQK---PYGGHACNVTDPETFNALLLNGLASLLHHREAA-
6	HHPRED-g	3om8_A	0.211	0.925	1.506	threading_6	DGASLAYRLDGEKPLLALSNSIGTTLH-WDAQLPALTRHFRVLRYDARGHGASSV-PPGPYTLARLGEDVLELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGP--AAQWDERIAAVLQAE-SETAAGFLGNWFPPALLERAEPVV--ERFRA---ATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVTAASHGELIAASIAGARLVTLP-AVHLSNVEFPQAFEGAVLSFLGA---------
7	SP3	3v48a	0.946	0.981	3.199	threading_7	HKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTL-AEDYSIAQAAELHQALVAAGIEHYAVVGHALGALVGQ-LALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWAARA-PRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQK--VPYGGHACNVTDPETFNALLLNGLASLLHHREAAL
8	SAM-T99	3om8A	0.198	0.932	2.399	threading_8	AGNLSFLATS-AEKPLLALSNSIGTTLHWDAQLPALTRHFRVLRYDARGHGASSVP-PGPYTLARLGEDVLELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAA--QWDERIAAVLQAEDSETAAGFLGNWFPPALLERAEPVVER----FRALATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVTAASHGELIAASIAGARLVTLP-AVHLSNVEFPQAFEGAVLSFLGA---------
9	MUSTER	3om8A	0.214	0.932	2.342	threading_9	L-ASLAYRLDGAAKPLLALSNSIGTTLHWDAQLPALTRHFRVLRYDARGHGASSVP-PGPYTLARLGEDVLELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGP--AAQWDERIAAVLQAEDSETAAGFLGNWFPPALLERAEPVVERFRAL----ATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVTAASHGELIAASIAGARLVTLP-AVHLSNVEFPQAFEGAVLSFLGA---------
10	SPARKS	3hysa	0.214	0.966	3.008	threading_10	RVINLAYDDNGTGDPVVFIAGRGGAGRTWHPQVPAFLAGYRCITFDNRGIGATENAE--GFTTQTMVADTAALIETLDIAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRARQFFNKAEAELYDSGPPTYDARARLLENFSRKTLNDDVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQTNRLPAYRNIAAPVLVIGFADDVVTPPYLGREVADALPNGRYLQIPDAGHLGFFERPEAVNTAMLKFFASVK-------

Predicted Tertiary Structure


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TM-score=0.840 to 1a88A SCOP code=c.69.1.12	TM-score=0.840 to 1a88A SCOP code=c.69.1.12	TM-score=0.842 to 1a88A SCOP code=c.69.1.12	TM-score=0.838 to 1a88A SCOP code=c.69.1.12	TM-score=0.840 to 1a88A SCOP code=c.69.1.12