Template-based Modeling Results for RUTA_ECOLI

Submitted Primary Sequence

>Length 382
MQDAAPRLTFTLRDEERLMMKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSARYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MQDAAPRLTFTLRDEERLMMKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSARYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHCCCCHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MQDAAPRLTFTLRDEERLMMKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSARYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
5532223222223333312010000010012011012222322110300110021034130100000110201213132122111000000000100230100000002121001001000000100201000000001132102310122222212201200210020022002323120301001023031213222101000002031001000210200000032132121002002201300341223011000000002312310231022023102330011012202221322232202200110111112211001002100410220021110100000011012102100220001023241232223434
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MQDAAPRLTFTLRDEERLMMKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSARYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
1	MUSTER	1nqkA	0.219	0.895	2.951	threading_1	-----------------MSLNMFWFLPTHGDGHYLGTEEGSRPVDHGYLQQIAQAADRLGYTGVLIPT-----------GRSCEDAWLVAASMIPVTQRLKFLVALRPSVTSPTVAARQAATLDRLSNGRALFNLVTGSDPQELAGDGV---FLDHSERYEASAEFTQVWRRLLQRETVDFNGKHIHVRGAKLPAIQQPYPPLYFGGSSDVAQELAAEQVDLYLTWGEP---PELVKEKIEQVRAKAAAHGRKIRFGIRLHVIVRETNDEAWQAAERLISHLDDETIAKAQAAF----ARDNLEISPNLWAGVGLVGGAGTALVGDGPTVAARINEYAAL-GIDSFVLSGYPHLEEAYRVGELLFPLLDVAIPEIPQPQPL-
2	SPARKS	3b9na	0.205	0.945	5.397	threading_2	-----------------KKIHINAFEMNCVGHWRHPENQRHRYTDLNYWTELAQLLEKGKFDALFLADVVGIYDVREAVQIPVNDPLMLISAMAYVTKHLAFAVTFSTTYEHPYGHARRMSTLDHLTKGRIAWNVVTSHLPSADKNFGIK-KILEHDERYDLADEYLEVCYKLWEGSWENHSGKYFEVPGPHLEPSPQRTPVIYQAGMSERGREFAAKHAECVFLGGKD---VETLKFFVDDIRKRAKKYGRNIKMFAGICVIVGKTHDEAMEKLNSFQKYWSEGHLAHYGGGTGYDLSKYSSNSVGEIINNMSKLGKWFKLSVGTPKKVADEMQYLVEEAGIDGFNLVQYVSPGTFVDFIELVVPELQKRGLYRVDYEEGT
3	PROSPECT2	3b9nA	0.194	0.945	4.146	threading_3	-----------------KKIHINAFEHIAHGLWRHPENQRHRYTDLNYWTELAQLLEKGKFDALFLADVVGIYDVREAVQIPVNDPLMLISAMAYVTKHLAFAVTFSTTYEHPYGHARRMSTLDHLTKGRIAWNVVTSHLPSADKNFGIK-KILEHDERYDLADEYLEVCYKLWEGSEINHSGKYFEVPGPHLCEPSQRTPVIYQAGMSERGREFAAKHAECVFLGGKD---VETLKFFVDDIRKRAKKYGRNIKMFAGICVIVGKTHDEAMEKLNSFQKYWSLEGHLAHYGGGSSNDYIGSISVGEIINNMSKLDGKWFKLSVGTPKKVADEMQYLVEEAGIDGFNLVQYVSPGTFVDFIELVVPELQKRGLYRVDYEEGT
4	PPA-I	1nqkA	0.222	0.898	5.157	threading_4	-----------------MSLNMFWFLPTHGDGHYLGTEEGSRPVDHGYLQQIAQAADRLGYTGVLIPT-----------GRSCEDAWLVAASMIPVTQRLKFLVALRPSVTSPTVAARQAATLDRLSNGRALFNLVTGSDPQELAGDGV---FLDHSERYEASAEFTQVWRRLLQRETVDFNGKHIHVRGAKLPAIQQPYPPLYFGGSSDVAQELAAEQVDLYLTWGEP---PELVKEKIEQVRAKAAAHGRKIRFGIRLHVIVRETNDEAWQAAERLISHLDDETIAKAQAAFARDNLEISPN---LWAGVGLVRGGAGTALVGDGPTVAARINEYAAL-GIDSFVLSGYPHLEEAYRVGELLFPLLDVAIPEIPQPQPL-
5	HHPRED-l	1tvl_A	0.208	0.919	4.247	threading_5	---------------RADFIQFGAMIHGVTDGWRHPDVDPSASTNIEFYMKKAQTAEKGLFSFIFIADGLFISEKSIPHFLNRFEPITILSALASVTKNIGLVGTFSTSFTEPFTISRQLMSLDHISGGRAGWNLVTSPQEGAARNHSKSN-LPEHTERYEIAQEHLDVVRGLWNSWRLNHKGKYFQVEGPLNIGRKQGEPVVFQAGSSETGRQFAAKNADAIFTHSNSLEETKAFYADVKSRAADEGRDPSSVRIFPGISPIVADTEEEAEKKYREFAELIPIENA-------------EAKARNLTLREVAQEMAFPRTLFIGTPERVASLIETWFNAEAADGFIVGS-DIPGTLDAFVEKVIPILQERGLYRQDYRGG-
6	HHPRED-g	3sdo_A	0.234	0.953	5.548	threading_6	-----G------SMT-RKHIHFGVLIQGAGANWKHPSVPPDASVNFDFYVDRARRAENAGIAFAFIADSAYVTPKSAPHFLNRFEPISLLSALAVLTSKIGLVGTMSSSYSEPYNVARQFASLDLISGGRAGWNVVTSSIEGTGKNYGR--PHPDHAQRYAIAAEHLDVVQGLWDSWDDDHRGRFFSVEGLNIRRSPQGQPVIFQAGSSDDGIDLAGRSADAVFSNGSTFDEARVF---YRRVKAAAAAAGRNVKVFPGIGPIVGATQQEADDKYRQVRDLLSPRALAYLSHFFQHDFSVYPLDTLREVAYEVS-TRRSNEAFIGTPEAVASEMIRWVDEGAADGFMLGLPVTGFGLDDFVDHVLPVLSARGYFDPVRRGAT
7	SP3	3b9na	0.205	0.945	5.375	threading_7	-----------------KKIHINAFEMNCVGHWRHPENQRHRYTDLNYWTELAQLLEKGKFDALFLADVVGIYDVREAVQIPVNDPLMLISAMAYVTKHLAFAVTFSTTYEHPYGHARRMSTLDHLTKGRIAWNVVTSHLPSADKNFGIK-KILEHDERYDLADEYLEVCYKLWEGSWENHSGKYFEVPGPHLEPSPQRTPVIYQAGMSERGREFAAKHAECVFLGGKD---VETLKFFVDDIRKRAKKYGRNIKMFAGICVIVGKTHDEAMEKLNSFQKYWSEGHLAHYGGGTGYDLSKYSSNSVGEIINNMSKLGKWFKLSVGTPKKVADEMQYLVEEAGIDGFNLVQYVSPGTFVDFIELVVPELQKRGLYRVDYEEGT
8	SAM-T99	3b9nB	0.197	0.945	4.941	threading_8	-----------------KKIHINAFEMNCVGHWRHPENQRHRYTDLNYWTELAQLLEKGKFDALFLADVVGIYDVYRQSQIPVNDPLMLISAMAYVTKHLAFAVTFSTTYEHPYGHARRMSTLDHLTKGRIAWNVVTSHLPSADKNFGIK-KILEHDERYDLADEYLEVCYKLWEGSWINHSGKYFEVPGPLCEPSPQRTPVIYQAGMSERGREFAAKHAECVFLGG---KDVETLKFFVDDIRKRAKKYGRNPDHIKMICVIVGKTHDEAMEKLNSFQKYWSLEGHLAHYGGGTGYDLSKYSSNDYIGNNMSKLDGKWFKLSVGTPKKVADEMQYLVEEAGIDGFNLVQYVSPGTFVDFIELVVPELQKRGLYRVDYEEGT
9	MUSTER	3b9nB	0.207	0.950	2.675	threading_9	MT---------------KKIHINAFEMNCVGHWRHPENQRHRYTDLNYWTELAQLLEKGKFDALFLADVVGIYDVYRQSQIPVNDPLMLISAMAYVTKHLAFAVTFSTTYEHPYGHARRMSTLDHLTKGRIAWNVVTSHLPSADKNFGIK-KILEHDERYDLADEYLEVCYKLWEGHEINHSGKYFEVPGPLCEPSPQRTPVIYQAGMSERGREFAAKHAECVFLGGKD---VETLKFFVDDIRKRAKKYGRNIKMFAGICVIVGKTHDEAMEKLNSFQKYWSEGHLAHYGGGTGYDLSKYSSNSVGEIINNMSKLGKWFKLSVGTPKKVADEMQYLVEEAGIDGFNLVQYVSPGTFVDFIELVVPELQKRGLYRVDYEEGT
10	SPARKS	1tvla	0.219	0.919	5.164	threading_10	---------------RADFIQFGAMIHGVGGTWRHPDVDPSASTNIEFYMKKAQTAEKGLFSFIFIADGLFISEKSIPHFLNRFEPITILSALASVTKNIGLVGTFSTSFTEPFTISRQLMSLDHISGGRAGWNLVTSPQEGAARNHSKS-NLPEHTERYEIAQEHLDVVRGLWNSWEHDHKGKYFQVEGPLNGRSKQGEPVVFQAGSSETGRQFAAKNADAIFTHSNS---LEETKAFYADVKSRAADEGRDVRIFPGISPIVADTEEEAEKKYREFAELIPIENAV-----------TEAKARNLTLREVAQEMAFPRTLFIGTPERVASLIETWFNAEAADGFIVG-SDIPGTLDAFVEKVIPILQERGLYRQDYRGGT

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.936 to 1nqkA SCOP code=c.1.16.4	TM-score=0.938 to 1nqkA SCOP code=c.1.16.4	TM-score=0.815 to 1yw1A SCOP code=c.1.16.4	TM-score=0.823 to 1yw1A SCOP code=c.1.16.4	TM-score=0.936 to 1nqkA SCOP code=c.1.16.4