Template-based Modeling Results for RTN_ECOLI

Submitted Primary Sequence

>Length 518
MFIRAPNFGRKLLLTCIVAGVMIAILVSCLQFLVAWHKHEVKYDTLITDVQKYLDTYFADLKSTTDRLQPLTLDTCQQANPELTARAAFSMNVRTFVLVKDKKTFCSSATGEMDIPLNELIPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSGVFAALNLNLTPSLFYSSRQEDYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIAGIPLTVRLYADDWTWNDVWYAFLLGGMSGTVVGLLCYYLMSVRMRPGREIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAAELEKVLPVGVKFGINIAPDHLHSESFKADIQKLLTSLPAHHFQIVLEITERDMLKEQEATQLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRPLPLDDFVRWLKKPYTPQW
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MFIRAPNFGRKLLLTCIVAGVMIAILVSCLQFLVAWHKHEVKYDTLITDVQKYLDTYFADLKSTTDRLQPLTLDTCQQANPELTARAAFSMNVRTFVLVKDKKTFCSSATGEMDIPLNELIPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSGVFAALNLNLTPSLFYSSRQEDYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIAGIPLTVRLYADDWTWNDVWYAFLLGGMSGTVVGLLCYYLMSVRMRPGREIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAAELEKVLPVGVKFGINIAPDHLHSESFKADIQKLLTSLPAHHFQIVLEITERDMLKEQEATQLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRPLPLDDFVRWLKKPYTPQW
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEECCEEEECCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCCCCCCEEEEEECHHHHHHHHHHCCCCCCCEEEEEECCHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEECCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHCCCCHHHHHHHHHHHHCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MFIRAPNFGRKLLLTCIVAGVMIAILVSCLQFLVAWHKHEVKYDTLITDVQKYLDTYFADLKSTTDRLQPLTLDTCQQANPELTARAAFSMNVRTFVLVKDKKTFCSSATGEMDIPLNELIPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSGVFAALNLNLTPSLFYSSRQEDYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIAGIPLTVRLYADDWTWNDVWYAFLLGGMSGTVVGLLCYYLMSVRMRPGREIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAAELEKVLPVGVKFGINIAPDHLHSESFKADIQKLLTSLPAHHFQIVLEITERDMLKEQEATQLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRPLPLDDFVRWLKKPYTPQW
54332242123100000000000000000010111124121202110220131022001102100220121131203200210012111122010000022410000001132202022002213223321000021222134200000001122242200000011200100012133332200000002200111123013233123121110202200010100023121210010011000001100100010011013003201200443200000100010421200001000102012203000210010022131002002000210021012025312220200000002202331012102300321203220010100121123233002002103400010000010000000100230121101012000220122221110010001003503010002112123102101422032010000021021310121033233343
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MFIRAPNFGRKLLLTCIVAGVMIAILVSCLQFLVAWHKHEVKYDTLITDVQKYLDTYFADLKSTTDRLQPLTLDTCQQANPELTARAAFSMNVRTFVLVKDKKTFCSSATGEMDIPLNELIPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSGVFAALNLNLTPSLFYSSRQEDYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIAGIPLTVRLYADDWTWNDVWYAFLLGGMSGTVVGLLCYYLMSVRMRPGREIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAAELEKVLPVGVKFGINIAPDHLHSESFKADIQKLLTSLPAHHFQIVLEITERDMLKEQEATQLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRPLPLDDFVRWLKKPYTPQW
1	MUSTER	3pjwA	0.177	0.776	2.408	threading_1	----------------------------------------------------------------------------AALFQEQAERSEKLRT-------------------SYQDNLTGLANRRYFEMQLNARVSNPEQ-ASSGYLLLLRVKDLAGLNQRLLKAVGEQLSRECAKYPETQNLGEFAVLAPGMTALQLAQSLDSALSSLYATGATDVAAVASIGLAPFAHGDSPQAVLSLGDQALAQAEGQGEQNWACLDDHHAWHRLLDQALNQRRFELFFQPVVAAQDTLVLHYKVLSRLLDEQGQTIPAGRFLPWLERFGWTARLDRLMLERVLEQMAGH------EESLALNLSSATLADPQALNKVFEILRAHSNLGARLTLEIGEEQLPEQAVLEQLTRRLRELGFSLSLQRFGGRFSMIGNLARLGLAYLKIDGSYIRAIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELSVIREMGLYGVQGQLFGEPKPWG--------------
2	SPARKS	3n3ta	0.304	0.488	5.610	threading_2	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ERLTLDTRLRQALERNELVLHYQPIVELASGRIVGGEALVRWEDPERGLV-PSAFIPAAEDTGLIVALSDWVLEACCTQLRAWQQQGRDDLTLSVNISTRQFEGEHLTRAVDRALARSGLRPDCLELEITENVLV-TDEVRTCLDALRARGVRLALDDFGTGYSSLSYLSQLPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLG-EVVAEGIETAQQYAFLRDRGCEFGQGNL-STPQAADAFASLLDRQKAS--
3	PPA-I	3pjwA	0.181	0.778	4.983	threading_3	----------------------------------------------------------------------------AALFQEQAERSEKLRTE------------------SYQDNLTGLANRRYFEMQLNARVSNPEQ-ASSGYLLLLRVKDLAGLNQRLGGQRTDELLKAVGEQLYPETQNLVTRIRGGEEALQLAQSLDSALSSLYATGATDVAAVASIGLAPFAHGDSPQAVLSLGDQALAQAEGQGEQNWACLDGHHAWHRLLDQALNQRRFELFFQPVVAAQDTQVLHYKVLSRLLDEQGQTIPAGRFLPWLERFGWTARLDRLMLERVLEQMAGH------EESLALNLSSATLADPQALNKVFEILRAHSNLGARLTLEIGEEQLPEQAVLEQLTRRLRELGFSLSLQRFGGRFSMIGNLARLGLAYLKIDGSYIRAIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELSVIREMGLYGVQGQLFGEPKPWG--------------
4	HHPRED-l	3hvb_A	0.204	0.483	4.993	threading_4	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAQRGDVIAILQQALETNSFRLLFQPVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLAEKIDRWVILNSIKLLAEHRAKG-HQTKLFVHLSSASLQDPGLLPWLGVALKAARLPPESLVFQISEADATSYKQAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQV-ENQEILKGLIAELHEQQKLSIVPFVESASVLATLWQAGATYIQGYYLQGPSQAMDYDFS---------
5	MUSTER	3gg1B	0.216	0.734	2.139	threading_5	------------------------------------------------------------------------------------------------MLTT--LIYRSQVHPDRPVDLDALVHRASSKN-----------LPLGITGILLF-------GLQFFQVLEEEALESLFSEIQDPRHRDVVELMRDSAYRRFHGTGMRILDLRLFE------TDGALEEILRFSTFGVTEPVNDRMFRLLSAFIADGGRYCLPEQPSRWMMMAPQHLPGQPCQFALQAIVEPAKKRVSSFEALIRS--PTGG-SPVEMFAAIAAEDRYRFDLESKAYAFALAGQLPL-----GKHQLAINLLPGSLYHPDAVGWLMDSLLAAGLRPDQVLIEVTETEVITCDQFRKVLKALRVAGMKLAIDDFGAGYSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAIVASVVRCCEDLGITVVAEGVETLEEWCWLQSVGIRLFQGFLFSRPCL--------NGIGEICW
6	HHPRED-g	3hvb_A	0.204	0.483	4.264	threading_6	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAQRGDVIAILQQALETNSFRLLFQPVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLAEKIDRWVILNSIKLLAEHRAKG-HQTKLFVHLSSASLQDPGLLPWLGVALKAARLPPESLVFQISEADATSYLQAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQV-ENQEILKGLIAELHEQQKLSIVPFVESASVLATLWQAGATYIQGYYLQGPSQAMDYDFS---------
7	SP3	3n3ta	0.304	0.488	5.429	threading_7	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ERLTLDTRLRQALERNELVLHYQPIVELASGRIVGGEALVRWEDPERGLV-PSAFIPAAEDTGLIVALSDWVLEACCTQLRAWQQQGRADLTLSVNISTRQFEGEHLTRAVDRALARSGLRPDCLELEITENVLV-TDEVRTCLDALRARGVRLALDDFGTGYSSLSYLSQLPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLG-EVVAEGIETAQQYAFLRDRGCEFGQGNL-STPQAADAFASLLDRQKAS--
8	SP3	3gfxa	0.200	0.724	5.205	threading_8	------------------------------------------------------------------------------------------------MLTT--LIYRSQVHPDR--PP----------VDLDALVHRASSKNLPLGITGILLFN--GLQFFQVLEGTEEALESLFSEIQSDPRHRDVVELM---RDYSAYRRFHG------------TGMRILDLRLFETDGALEEILRFSDRMFRLLSAFIADGGRYCLPEPLQPSAAPQHLPGQPCQFALQAIVEPAKKRVSSFEALIRS--PTGG-SPVEMFAAIAAEDRYRFDLESKAYAFALAGQLPL-----GKHQLAINLLPGSYHHPDAVGWLMDSLLAAGLRPDQVLIEVTETEVITCFDFRKVLKALRVAGMKLAIDDFGAGYSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAIVASVVRCCEDLGITVVAEGVETLEEWCWLQSVGIRLFQGFLFSRPCLNGIGEIC--------W
9	SAM-T99	3ii8B	0.308	0.483	6.754	threading_9	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HERLTLDTRLRQALERNELVLHYQPIVELASGRIVGGEALVRWEDPERGLV-PSAFIPAAEDTGLIVALSDWVLEACCTQLRAWQQQGRDDLTLSVNISTRQFEGEHLTRAVDRALARSGLRPDCLELEITENVLV-TDEVRTCLDALRARGVRLALDDFGTGYSSLSYLSQLPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLG-EVVAEGIETAQQYAFLRDRGCEFGQGNL-STPQAADAFASLLDR------
10	SAM-T99	3pjwA	0.173	0.803	3.223	threading_10	------------------------------------------------AALFQEQAERSEKLRTESYQDNLTGLANRRYFEMQLNARVSN----------------------PEQASSGYLLLLRVKDLAGLNQRLGGQRTDELLKAVGEQLSRECAKYPLVTRIRGGEFAVLAPGMTREE-----ALQLAQSLDSALSSLYATGATDVAAVASIGLAPFAHGDSQAVLSLGDQALAQAEGQGEQNWACLDGDDHHAWHRL------LDQALNQRRFELFFQPVVAADTQLVLHYKVLSRLLDEQGQTIPAGRFLPWLERFGWTARLDRLMLERVLEQMAGHEES------LALNLSSATLADPQALNKVFEILRAHSNLGARLTLEIGEEQLPEQAVLEQLTRRLRELGFSLSLQRFGGRFSMIGNLARLGLAYLKIDGSYIRAIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELSVIREMGLYGVQGQLFGEPKPW---------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.585 to 2basA SCOP code=c.1.33.1	TM-score=0.582 to 2basA SCOP code=c.1.33.1	TM-score=0.605 to 2basA SCOP code=c.1.33.1	TM-score=0.581 to 2basA SCOP code=c.1.33.1	TM-score=0.598 to 2basA SCOP code=c.1.33.1