Template-based Modeling Results for RTCR_ECOLI

Submitted Primary Sequence

>Length 532
MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS
CCEEEEEEEEECCCCCCCHHHHHHHCCCCEEEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCHHEEEECCCCCHHHHHHHHHCCCCCCCHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEECCCCCCHHHHHHCCCCHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEECHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHCCCHHHCCHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS
4422011101001022113012212322000000223122111010033032310031022001211331200001020231110310000002004113232332300000021111010010000213202020031022323322311210110111022022112212312332332232100020220230020022102423010001022220110002101213312331200001000010212001010111130011102312301010041000000100201131000001012322011113333010000000011310321033131120010000001020111232431030002000220033133214112301300000000120203000210010011001102211012310232024132323323222222222232310320131102101200431322011013103012303212220320131024120223213333234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS
1	MUSTER	1ny5B	0.293	0.686	2.472	threading_1	FRGLLEKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERS-------------PETEVIVIT-------------------------------------------------TIKT---AVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRKLRKENELLRREKDL-KEEEYVFESPKMKEILEKIKKIS-CAECPVLITGESGVGKEVVARLIHKLSDRSK---EPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEFTKSAQELLLSY------PWYGNVRELKNVIERAVLFSEGKFIDRGELSCLVN-------------------------------------------------------------------------------------------
2	SPARKS	1ojla	0.330	0.547	7.624	threading_2	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMIGSSPAMQHLLNEIAMVA-PSDATVLIHGDSGTGKELVARALHACSARSD---RPLVTLNCAALNESLLESELFGHEKGAFTKR---REGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKFTPQAMDLLIH------YDWPGNIRELENAIERAVVLLTGEYISERELPLAIAYSGEIQP--------------------LVDVEKEVILAALEKTGGNKTEAARQLGIT---------RKTLLAKLSR---------------
3	PPA-I	1ojlD	0.324	0.556	5.017	threading_3	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMIGSSPAMQHLLNEIAMVA-PSDATVLIHGDSGTGKELVARALHACSARS---DRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVGFTPQAMDLLIHY------DWPGNIRELENAIERAVVLLTGEYISERELPLAIAATPIKEIQP------------------LVDVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR------------------------
4	SP3	1ojla	0.330	0.547	7.289	threading_4	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMIGSSPAMQHLLNEIAMVA-PSDATVLIHGDSGTGKELVARALHACSARSD---RPLVTLNCAALNESLLESELFGHEKGAFTKR---REGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKFTPQAMDLLIH------YDWPGNIRELENAIERAVVLLTGEYISERELPLAIAYSGEIQP--------------------LVDVEKEVILAALEKTGGNKTEAARQLGIT---------RKTLLAKLSR---------------
5	PROSPECT2	1ny5A	0.297	0.690	3.867	threading_5	MNVLVIKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEIL-------------KWIKERSPETEV----IVITGHGTIKTA---------------------------------------------VEAMKMGAYDFLTKPCMLEEIELTINKAIEHRKLRKENELLRREK-DLKEEEYVFESPKMKEILEKIKKIS-CAECPVLITGESGVGKEVVARLIHKLSDRS---KEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEFTKSAQELLLS------YPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV--------------------------------------------------------------------------------------------
6	MUSTER	1ojlD	0.331	0.556	2.338	threading_6	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMIGSSPAMQHLLNEIAMVA-PSDATVLIHGDSGTGKELVARALHACSARS---DRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKFTPQAMDLLIHY------DWPGNIRELENAIERAVVLLTGEYISERELPLAIAATPIKEIQP------------------LVDVEKEVILAALEKTGGNKTEAARQLGIT---------RKTLLAKLSR---------------
7	HHPRED-l	1ny5_A	0.283	0.697	5.718	threading_7	-----------------------------------------MN-VLVIE-DDKVFRGLLEEYLSMKG--IKVESA-------ERGKEAY----KLLSEKHFNVVLLDL---LLPDVNGLEILKWIKERSPETEVIVITGHGTIKVEMKMGAYDFLTKPCMLEEIELTINKLRKENEREKDLKEEEYVFESPKMKEILEKIKKIS-CAECPVLITGESGVGKEVVARLIHKLSD---RSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVGFTKSAQELLLSY------PWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV--------------------------------------------------------------------------------------------
8	HHPRED-g	1ny5_A	0.297	0.690	5.767	threading_8	MNVLVIKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKW-------------IKERSPETEV----IVITGHGTIKTAVEAMKMGAYDFLTKP---------------------------------------------CMLEEIELTINKAIEHRKLRKENELLRREKD-LKEEEYVFESPKMKEILEKIKKIS-CAECPVLITGESGVGKEVVARLIHKLSDRSKE---PFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVGFTKSAQELLLSY------PWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV--------------------------------------------------------------------------------------------
9	PROSPECT2	1ojlA	0.333	0.547	3.591	threading_9	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMIGSSPAMQHLLNEIAMVA-PSDATVLIHGDSGTGKELVARALHACSARS---DRPLVTLNCAALNESLLESELFGHEKGAFTKR---REGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVGFTPQAMDLLIH------YDWPGNIRELENAIERAVVLLTGEYISERELPLAIAYSGEIQP--------------------LVDVEKEVILAALEKTGGNKTEAARQLGITRK---------TLLAKLSR---------------
10	SAM-T99	1ny5B	0.269	0.705	5.859	threading_10	------------------------------------------------------MNVLVIEDDKVF--RGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRKLRKENEEEEYVFESPKMKEILEKIKKIS-CAECPVLITGESGVGKEVVARLIHKLSDRS---KEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEFTKSAQELLLSY------PWYGNVRELKNVIERAVLFSEGKFIDRGELSCLVN-------------------------------------------------------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.660 to 1ny5B SCOP code=c.23.1.1	TM-score=0.613 to 1ny5B SCOP code=c.23.1.1	TM-score=0.686 to 1ny5B SCOP code=c.23.1.1	TM-score=0.623 to 1ny5B SCOP code=c.23.1.1	TM-score=0.613 to 1ny5B SCOP code=c.23.1.1