Template-based Modeling Results for RSTB_ECOLI

Submitted Primary Sequence

>Length 433
MKKLFIQFYLLLFVCFLVMSLLVGLVYKFTAERAGKQSLDDLMNSSLYLMRSELREIPPHDWGKTLKEMDLNLSFDLRVEPLSKYHLDDISMHRLRGGEIVALDDQYTFLQRIPRSHYVLAVGPVPYLYYLHQMRLLDIALIAFIAISLAFPVFIWMRPHWQDMLKLEAAAQRFGDGHLNERIHFDEGSSFERLGVAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNLSAAESQALNRDISQLEALIEELLTYARLDRPQNELHLSEPDLPLWLSTHLADIQAVTPDKTVRIKTLVQGHYAALDMRLMERVLDNLLNNALRYCHSTVETSLLLSGNRATLIVEDDGPGIAPENREHIFEPFVRLDPSRDRSTGGCGLGLAIVHSIALAMGGTVNCDTSELGGARFSFSWPLWHNIPQFTSA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKKLFIQFYLLLFVCFLVMSLLVGLVYKFTAERAGKQSLDDLMNSSLYLMRSELREIPPHDWGKTLKEMDLNLSFDLRVEPLSKYHLDDISMHRLRGGEIVALDDQYTFLQRIPRSHYVLAVGPVPYLYYLHQMRLLDIALIAFIAISLAFPVFIWMRPHWQDMLKLEAAAQRFGDGHLNERIHFDEGSSFERLGVAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNLSAAESQALNRDISQLEALIEELLTYARLDRPQNELHLSEPDLPLWLSTHLADIQAVTPDKTVRIKTLVQGHYAALDMRLMERVLDNLLNNALRYCHSTVETSLLLSGNRATLIVEDDGPGIAPENREHIFEPFVRLDPSRDRSTGGCGLGLAIVHSIALAMGGTVNCDTSELGGARFSFSWPLWHNIPQFTSA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHCCCEEEECCCEEEEEECCCCCEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKKLFIQFYLLLFVCFLVMSLLVGLVYKFTAERAGKQSLDDLMNSSLYLMRSELREIPPHDWGKTLKEMDLNLSFDLRVEPLSKYHLDDISMHRLRGGEIVALDDQYTFLQRIPRSHYVLAVGPVPYLYYLHQMRLLDIALIAFIAISLAFPVFIWMRPHWQDMLKLEAAAQRFGDGHLNERIHFDEGSSFERLGVAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNLSAAESQALNRDISQLEALIEELLTYARLDRPQNELHLSEPDLPLWLSTHLADIQAVTPDKTVRIKTLVQGHYAALDMRLMERVLDNLLNNALRYCHSTVETSLLLSGNRATLIVEDDGPGIAPENREHIFEPFVRLDPSRDRSTGGCGLGLAIVHSIALAMGGTVNCDTSELGGARFSFSWPLWHNIPQFTSA
4431012101000000000000000002100220032001200200010012103302231013003212431202020111132313321123132120001222100002024221000002122111122130010000000000000000000110121023012002401322133203243220023002001300210230121132012000220100001020101103422223122013102202200220010031233323232230102100110022024213322020201232120100130011000000200141032201000112242000102121320123103200210120231222222000000000100031030201011133200101000002332342335
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKKLFIQFYLLLFVCFLVMSLLVGLVYKFTAERAGKQSLDDLMNSSLYLMRSELREIPPHDWGKTLKEMDLNLSFDLRVEPLSKYHLDDISMHRLRGGEIVALDDQYTFLQRIPRSHYVLAVGPVPYLYYLHQMRLLDIALIAFIAISLAFPVFIWMRPHWQDMLKLEAAAQRFGDGHLNERIHFDEGSSFERLGVAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNLSAAESQALNRDISQLEALIEELLTYARLDRPQNELHLSEPDLPLWLSTHLADIQAVTPDKTVRIKTLVQGHYAALDMRLMERVLDNLLNNALRYCHSTVETSLLLSGNRATLIVEDDGPGIAPENREHIFEPFVRLDPSRDRSTGGCGLGLAIVHSIALAMGGTVNCDTSELGGARFSFSWPLWHNIPQFTSA
1	MUSTER	3dgeA	0.294	0.510	1.468	threading_1	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVVEAYIDPTRIRQVLLNLLNNGVKYSKKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKDRA-------
2	MUSTER	3a0rA	0.179	0.709	1.396	threading_2	------------------------------------------------FSESILESLETKDGKKAEQLFGLKKE-NVLGRRLKDLPDFEEIGSVAES----VFENKEPVFLNFYKFGFNIRFSPFRNAKTQLLE-----------------GVIITID-------------------DVTELYKYEEE---------------KRRERLSILGEMTARVAHEIRNPITIIGGFIMRMKETLKKYINIITNELSRLETIVKEILEYSKER----VLEFTEFNLNELIREVYVLFEEKIRKMNFCFETDNEDLRVEADRTRIKQVLINLVQNAIEATNGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFF------------TTLGLSICRKIIEDEGGKIWTENRE-NGVVFIFEIPKTPEKR-----
3	SPARKS	3d36a	0.201	0.483	4.184	threading_3	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPHMVIRLAASISHEIRNPLTAARGFIQLIEEQPLQYARIAIEELDRAEAIITDYLTFAKPA----PETPEKLNVKLEIERVIDILRPLANMSCVDIQATLAPFSVIGEREKFRQCLLNVMKNAIEAMPNGLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPYF-----TTKGVKGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLPLAS--------
4	PPA-I	3dgeA	0.294	0.510	3.330	threading_4	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFEPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKDRA-------
5	SP3	3a0ra	0.177	0.744	3.139	threading_5	----FSES---ILESLETAIITLSKDGRITENKKAEQLFG----------------LKKENV------LGRRL-KDL----PDFEEIGSVAESVFENKEPVFLN-----FYKFGERYFNIRFSPFRNAKTQL-----------------LEGVIITID-------------------DVTELYKYEE-----ERKRR-ERLSI--------LGEMTARVAHEIRNPITIIGGFIMRMKKHLDKYINIITNELSRLETIVKEILEYSKER----VLEFTEFNLNELIREVYVLFEEKIRKMNIDFCFDNEDLRVEADRTRIKQVLINLVQNAIEATNGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFF------------TTLGLSICRKIIEDHGGKIWTENRE-NGVVFIFEIPKTPEKR-----
6	HHPRED-l	2c2a_A	0.286	0.517	4.721	threading_6	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEN---V-----TESKELERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFEVPPVEAYIDPTRIRQVLLNLLNNGVKYSKAYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVD---------TGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKDR--------
7	SPARKS	3a0ra	0.166	0.737	3.419	threading_7	-----------------------------------------FSESILESLETAIITLSKDGRITEWKKAEQLFGLKVLGRRLKDLPDFEEIGSVAES---VFENKEPVFLNFYKFGERYFNIR---FSPFRNAKTQLLEGVIITID-------------------------------DVTELYKYE------------EERKRR--ERLSILGEMTARVAHEIRNPITIIGGFIMRMKKHLDKYINIITNELSRLETIVKEILEYSKER----VLEFTEFNLNELIREVYVLFEEKIRKMNIDFCFDNEDLRVEADRTRIKQVLINLVQNAIEATNGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFF------------TTLGLSICRKIIDEHGGKIWTEN-RENGVVFIFEIPKTPEKR-----
8	HHPRED-g	2c2a_A	0.283	0.515	3.824	threading_8	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MENVTESKE--------LERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNLDKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFAVNVLFESNVP-CPVEAYIDPTRIRQVLLNLLNNGVKYSKAYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVD---------TGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKDR--------
9	PROSPECT2	1jm6a	0.111	0.725	2.576	threading_9	A--------------------------------------------------------SLAGAPKYIEHFSKFSPSPLSMKQFLDFGACEKTSFTF-------------------------------------LRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWYVQSLLDIMEFLDKDPED--------------------HRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYDPVSNQNIDRFYLSRISIRMLINQHTLIFDPKHIGSID--PNCSVSDVVKDAYDMAKYYMASPDLEIQEATQPIHMVYVPSHLYHMLFELFKNAMRATLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYS----TAPTPAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVERLP
10	SP3	3d36a	0.206	0.483	3.634	threading_10	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPHMVIRLAASISHEIRNPLTAARGFIQLIEEQPLQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNVKLEIERVIDILRPLANMSCVDIQATLAPFSVIGEREKFRQCLLNVMKNAIEAMPNTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPYFTT-----KGVKGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLPLAS--------

Predicted Tertiary Structure


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TM-score=0.577 to 1ys3B SCOP code=d.122.1.3	TM-score=0.571 to 1ys3B SCOP code=d.122.1.3	TM-score=0.567 to 1ys3B SCOP code=d.122.1.3	TM-score=0.554 to 1ys3B SCOP code=d.122.1.3	TM-score=0.573 to 1ys3B SCOP code=d.122.1.3