Template-based Modeling Results for RSPB_ECOLI

Submitted Primary Sequence

>Length 339
MKSILIEKPNQLAIVEREIPTPSAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVESARVGERVAVDPVVSCGHCYPCSIGKPNVCTTLAVLGVHADGGFSEYAVVPAKNAWKIPEAVADQYAVMIEPFTIAANVTGHGQPTENDTVLVYGAGPIGLTIVQVLKGVYNVKNVIVADRIDERLEKAKESGADWAINNSQTPLGEIFTEKGIKPTLIIDAACHPSILKEAVTLASPAARIVLMGFSSEPSEVIQQGITGKELSIFSSRLNANKFPIVIDWLSKGLIKPEKLITHTFDFQHVADAISLFEQDQKHCCKVLLTFSE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKSILIEKPNQLAIVEREIPTPSAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVESARVGERVAVDPVVSCGHCYPCSIGKPNVCTTLAVLGVHADGGFSEYAVVPAKNAWKIPEAVADQYAVMIEPFTIAANVTGHGQPTENDTVLVYGAGPIGLTIVQVLKGVYNVKNVIVADRIDERLEKAKESGADWAINNSQTPLGEIFTEKGIKPTLIIDAACHPSILKEAVTLASPAARIVLMGFSSEPSEVIQQGITGKELSIFSSRLNANKFPIVIDWLSKGLIKPEKLITHTFDFQHVADAISLFEQDQKHCCKVLLTFSE
CEEEEEECCCCEEEEECCCCCCCCCEEEEEEEEEEECHHHHHHHCCCCCEECCCEECCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCHHHHCCCHHHCCCCEEEEECCCCCCEEEEEEEHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCCHHHHEEEEEEHHHHHHHHHHHHCCCCCEEEEEEECCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKSILIEKPNQLAIVEREIPTPSAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVESARVGERVAVDPVVSCGHCYPCSIGKPNVCTTLAVLGVHADGGFSEYAVVPAKNAWKIPEAVADQYAVMIEPFTIAANVTGHGQPTENDTVLVYGAGPIGLTIVQVLKGVYNVKNVIVADRIDERLEKAKESGADWAINNSQTPLGEIFTEKGIKPTLIIDAACHPSILKEAVTLASPAARIVLMGFSSEPSEVIQQGITGKELSIFSSRLNANKFPIVIDWLSKGLIKPEKLITHTFDFQHVADAISLFEQDQKHCCKVLLTFSE
210111223430101213212233110101020000000000103131000210100111000100100431420321110001010101202101212120031010000111110010000004000201420121100001000000000120312321200000000000000000210230110000121331021033010110012332201200233222010001001112002200200132010000000343130113000121020100101121011001002311030330000101031013001103443420010002136
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKSILIEKPNQLAIVEREIPTPSAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVESARVGERVAVDPVVSCGHCYPCSIGKPNVCTTLAVLGVHADGGFSEYAVVPAKNAWKIPEAVADQYAVMIEPFTIAANVTGHGQPTENDTVLVYGAGPIGLTIVQVLKGVYNVKNVIVADRIDERLEKAKESGADWAINNSQTPLGEIFTEKGIKPTLIIDAACHPSILKEAVTLASPAARIVLMGFSSEPSEVIQQGITGKELSIFSSRLNANKFPIVIDWLSKGLIKPEKLITHTFDFQHVADAISLFEQDQKHCCKVLLTFSE
1	MUSTER	1e3jA	0.300	0.994	3.485	threading_1	NLSAVLYKQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAY-GA-FVVCTARSPRRLEVAKNCGADLVVDPAKEEESSIIERIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYCNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCRQ
2	SPARKS	3m6ia	0.256	0.991	4.198	threading_2	NIGVFTNPQHDLWISEASPEELKEGEVTVAVRSTGICGSDVHFWKHGPMIVECDHVLGHESAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPPGLLRRYVNHPAVWCHKIG-NMSYENGAMLEPLSVALAGLQRAGVRLGDPVLICGAGPIGLITMLCAKA-AGACPLVITDIDEGRLKFAKEICPEVVTHKVEEESAKKIVEGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRASVREVDLQFQYRYCNTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQIQSL-
3	PROSPECT2	1e3ja	0.300	0.994	5.232	threading_3	NLSAVLYKQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKA--YGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYCNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCRQ
4	PPA-I	1e3jA	0.300	0.994	3.976	threading_4	NLSAVLYKQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAY-GA-FVVCTARSPRRLEVAKNCGADLVVDPAKEEESSIIERIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYCNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCRQ
5	HHPRED-l	2d8a_A	0.334	0.926	2.227	threading_5	-VAI-KTKPGGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWRIKPPQI-GHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCY------------TKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVL-AGPISGKSVLITGAGPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEV-DDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNLIIFKALTIYGITGLWETWYTVSRLLQSGKLNLDPIITHKYKFDKYEEAFEL-RAGKT--GKVVF----
6	HHPRED-g	1pl8_A	0.283	0.991	1.965	threading_6	NLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLG--LKIMLKCDP
7	SP3	3m6ia	0.256	0.991	4.435	threading_7	TIGVFTNPQHDLWISEASPEELKEGEVTVAVRSTGICGSDVHFWKHGPMIVECDHVLGHESAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPPGLLRRYVNHPAVWCHKIGN-MSYENGAMLEPLSVALAGLQRAGVRLGDPVLICGAGPIGLITMLCAKA-AGACPLVITDIDEGRLKFAKEICPEVVTHKVEEESAKKIVESGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRASVREVDLQFQYRYCNTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQIQSL-
8	SAM-T99	1e3jA	0.300	0.994	3.036	threading_8	NLSAVLYKQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGDFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAF-VVCTARSPRRLEVAKNCGADVTLDPAKEEESSIIEAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYCNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCRQ
9	MUSTER	2ejvA	0.296	0.988	3.444	threading_9	MRALAKLAPEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWRIRPPLVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTVYAGSGVSGKSVLITGAGPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY-ADRLVNPLEEDLLEVVRRVGSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGELMRGITAFGIARLWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLASG--QAVKVILDPKA
10	SPARKS	1e3ja	0.303	0.994	3.717	threading_10	NLSAVLYKQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGDFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKA-YGA-FVVCTARSPRRLEVAKNCGADVTLDPAKEEIIERIRSAGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYCNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCRQ

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.975 to 1e3jA SCOP code=b.35.1.2	TM-score=0.976 to 1e3jA SCOP code=b.35.1.2	TM-score=0.930 to 1e3jA SCOP code=b.35.1.2	TM-score=0.976 to 1e3jA SCOP code=b.35.1.2	TM-score=0.974 to 1e3jA SCOP code=b.35.1.2