Template-based Modeling Results for RSGA_ECOLI

Submitted Primary Sequence

>Length 350
MSKNKLSKGQQRRVNANHQRRLKTSKEKPDYDDNLFGEPDEGIVISRFGMHADVESADGDVHRCNIRRTIRSLVTGDRVVWRPGKPAAEGVNVKGIVEAVHERTSVLTRPDFYDGVKPIAANIDQIVIVSAILPELSLNIIDRYLVACETLQIEPIIVLNKIDLLDDEGMAFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQKEILTNDISDNSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQITQGFVEFHDYLGLCKYRDCKHDTDPGCAIREAVEEGKIAETRFENYHRILESMAQVKTRKNFSDTDD
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSKNKLSKGQQRRVNANHQRRLKTSKEKPDYDDNLFGEPDEGIVISRFGMHADVESADGDVHRCNIRRTIRSLVTGDRVVWRPGKPAAEGVNVKGIVEAVHERTSVLTRPDFYDGVKPIAANIDQIVIVSAILPELSLNIIDRYLVACETLQIEPIIVLNKIDLLDDEGMAFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQKEILTNDISDNSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQITQGFVEFHDYLGLCKYRDCKHDTDPGCAIREAVEEGKIAETRFENYHRILESMAQVKTRKNFSDTDD
CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEECCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCEEECCCCCCCEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSKNKLSKGQQRRVNANHQRRLKTSKEKPDYDDNLFGEPDEGIVISRFGMHADVESADGDVHRCNIRRTIRSLVTGDRVVWRPGKPAAEGVNVKGIVEAVHERTSVLTRPDFYDGVKPIAANIDQIVIVSAILPELSLNIIDRYLVACETLQIEPIIVLNKIDLLDDEGMAFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQKEILTNDISDNSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQITQGFVEFHDYLGLCKYRDCKHDTDPGCAIREAVEEGKIAETRFENYHRILESMAQVKTRKNFSDTDD
54433224223221233334323224332313332113322000001012101021331200101023224210200100011133223223220001101322110113323311100001100000000121312220011000002213010000000110033301210221021132122200000132331031012001210000001111010001110022222122331233222132212001002013200001000023211231223101200110120022031220213221101012003323023200210120031012122332224335
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSKNKLSKGQQRRVNANHQRRLKTSKEKPDYDDNLFGEPDEGIVISRFGMHADVESADGDVHRCNIRRTIRSLVTGDRVVWRPGKPAAEGVNVKGIVEAVHERTSVLTRPDFYDGVKPIAANIDQIVIVSAILPELSLNIIDRYLVACETLQIEPIIVLNKIDLLDDEGMAFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQKEILTNDISDNSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQITQGFVEFHDYLGLCKYRDCKHDTDPGCAIREAVEEGKIAETRFENYHRILESMAQVKTRKNFSDTDD
1	MUSTER	2rcnA	0.942	0.794	2.793	threading_1	----------------------------------LFGEPAEGIVISRFGMHADVESADGEVHRCNIRRTIRSLVTGDRVVWRPGKV-------KGIVEAVHERTSVLTRP-----VKPIAANIDQIVIVSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQ-------------NEILTNTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADPGCAIREAVENGAIAETRFENYHRILESMA-------------
2	SPARKS	2rcna	0.935	0.794	5.961	threading_2	----------------------------------LFGEPAEGIVISRFGMHADVESADGEVHRCNIRRTIRSLVTGDRVVWRPGK-------VKGIVEAVHERTSVLTRPV-----KPIAANIDQIVIVSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLG-------------LQNEILTNTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADPGCAIREAVENGAIAETRFENYHRILESMA-------------
3	PROSPECT2	2yv5A	0.369	0.820	5.025	threading_3	MGK---------------------------------KELKRGLVVDREAQMIGVYFEDGKTYRGIPRGKVLKIYAGDYVWGEVVD------PNTFAIEEVEERKNLLIRP--------KVANVDRVIIVETLMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEGFICILAGPSGVGKSSILSRLTG-----------EELRTQEVTTTGVRLIPFGKGSFVGDTPGFSKVEATFVKPREVRNYFREFLRYQ--CKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELC---RED
4	PPA-I	2rcnA	0.935	0.794	4.085	threading_4	----------------------------------LFGEPAEGIVISRFGMHADVESADGEVHRCNIRRTIRSLVTGDRVVWRPGK-------VKGIVEAVHERTSVLTRPV-----KPIAANIDQIVIVSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLG-------------LQNEILTNTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADPGCAIREAVENGAIAETRFENYHRILESMA-------------
5	HHPRED-l	1u0l_A	0.393	0.777	5.405	threading_5	-------------------------------------LRRRGIVVSFHSNMVTVEDEEGERILCKLRGKFRKIYVGDRVEYTPDE------TGSGVIENVLHRKNLLTKPH--------VANVDQVILVVTVMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIY-SGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAINPG-LKLR-------------TTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYFKEFGD--KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYELLGRR----------
6	HHPRED-g	2rcn_A	0.953	0.791	5.541	threading_6	----------------------------------LFGEPAEGIVISRFGMHADVESADGEVHRCNIRRTIRSLVTGDRVVWRPGK-------VKGIVEAVHERTSVLTRP-----VKPIAANIDQIVIVSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLG-LQNILTN-------------TAARLYHFPHGGDVIDSPGVREFGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADPGCAIREAVENGAIAETRFENYHRILESMA-------------
7	SP3	2rcna	0.928	0.794	5.897	threading_7	----------------------------------LFGEPAEGIVISRFGMHADVESADGEVHRCNIRRTIRSLVTGDRVVWRP-------GKVKGIVEAVHERTSVLTRPV-----KPIAANIDQIVIVSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLG-------------LQNEILTNTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADPGCAIREAVENGAIAETRFENYHRILESMA-------------
8	SAM-T99	2rcnA	0.957	0.794	5.219	threading_8	----------------------------------LFGEPAEGIVISRFGMHADVESADGEVHRCNIRRTIRSLVTGDRVVWRPGK-------VKGIVEAVHERTSVLTRPV-----KPIAANIDQIVIVSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQNEILTN-------------TAARLYHFPHGGDVIDSPGVREFGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADPGCAIREAVENGAIAETRFENYHRILESMA-------------
9	MUSTER	2yv5A	0.366	0.820	2.560	threading_9	---------------------------------MGKKELKRGLVVDREAQMIGVYLEDGKTYRGIPRGKVLKIYAGDYVWGEVVDPN------TFAIEEVEERKNLLIRPK--------VANVDRVIIVETLMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEGFICILAGPSGVGKSSILSRLTGEE-----------LRTQEVTTTGVRLIPFGKGSFVGDTPGFSKVEAMFVKPREVRNYFREFLRYQ--CKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKEL---CRED
10	SPARKS	2yv5a	0.369	0.820	5.456	threading_10	---------------------------------MGKKELKRGLVVDREAQMIGVYLEDGKTYRGIPRGKVLKIYAGDYVWGEVVDP------NTFAIEEVEERKNLLIRPK--------VANVDRVIIVETLMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEGFICILAGPSGVGKSSILSRLTG-----------EELRTQEVTTTGVRLIPFGKGSFVGDTPGFSKVEAMFVKPREVRNYFREFLRYQ--CKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLE--EIKELCRED-

Predicted Tertiary Structure


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TM-score=0.806 to 1u0lA SCOP code=b.40.4.5	TM-score=0.812 to 1u0lA SCOP code=b.40.4.5	TM-score=0.811 to 1u0lA SCOP code=b.40.4.5	TM-score=0.795 to 1u0lA SCOP code=b.40.4.5	TM-score=0.811 to 1u0lA SCOP code=b.40.4.5