Template-based Modeling Results for RP54_ECOLI

Submitted Primary Sequence

>Length 477
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDTHEEIDTRETQDSETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGTSGDYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDETGYLTVPLEDILESIGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARLIISDHLDLLANHDFRTLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGHWTVELNSDSIPRLQINQHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDTHEEIDTRETQDSETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGTSGDYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDETGYLTVPLEDILESIGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARLIISDHLDLLANHDFRTLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGHWTVELNSDSIPRLQINQHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV
CCCCHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCEEECCCCEEEHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDTHEEIDTRETQDSETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGTSGDYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDETGYLTVPLEDILESIGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARLIISDHLDLLANHDFRTLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGHWTVELNSDSIPRLQINQHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV
553113131121121122012003102111220131013104322213323233323243233232232232233332233222222132112222221222322333122121322320221011102212123211100100020013201022203100420233313231021002101402120000220300000002313321210220110012002112322021003103033310220020022011311321322323200000001223320001012310120100220121034233311131022103102101300210121012003000210220132233212101012003104113000020123110201200020110011303242223001200110022003333523211222002002422020021101201431412213224323
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDTHEEIDTRETQDSETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGTSGDYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDETGYLTVPLEDILESIGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARLIISDHLDLLANHDFRTLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGHWTVELNSDSIPRLQINQHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV
1	PROSPECT2	1gw5b	0.117	0.914	1.560	threading_1	SKKEKRKEAVKKVIVSSLFPDVVNCMQTDNLELKKLVYLYLMNNSFVKDCEDPNPLIGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVANSNLLDLNPQNINKLLTALNECT--EWGQIFILDCLSYNPKDDREAQSICERVTPR-----LSHANSAVVLSAVKVLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVAL--------RNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANI-----AQVLAELKEYATEVDVDFVRKAVRAIGRCAQSAERCVSTLLDVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAM-------------IWIVGEYAER--------IDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSIEPTLLDEAFV
2	PPA-I	2k9mA	0.208	0.273	1.620	threading_2	-------------------------------------------------------------------------------------------------------------------YTPSELEELQQNIKLE-LEGKEQELALELLNYLNEKGFLSKSVEEISDVLR---CSVEELEKVRQKVLRLEPLGVCSKDVWEFLELQIEEIYPE------EEEILKKALRDLKRGKKLK------------PEIKGKLSRLRLFPLSSSAEK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	HHPRED-l	2k9m_A	0.215	0.273	4.341	threading_3	-------------------------------------------------------------------------------------------------------------------YTPSELEELQQNIK-LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLR---CSVEELEKVRQKVLRLEPLGVCSKDVWEFLELQIEEIYP-EE----E-EILKKALRDLKRG--------KKLKP----EIKGKLSRLRLFPLSSSAEK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4	HHPRED-g	2k9m_A	0.223	0.273	5.170	threading_4	-------------------------------------------------------------------------------------------------------------------YTPSELEELQQNIK-LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLR---CSVEELEKVRQKVLRLEPLGVCSKDVWEFLELQIEEIYP-EE----E-EILKKALRDLK--------RGKKLKP----EIKGKLSRLRLFPLSSSAEK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	SAM-T99	2o9lA	0.433	0.126	3.964	threading_5	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LTQGELMKLIKEIVENEDKRKPYSDQEIANILKEKGFKVARRTVAKYREMLGIPSSRERR---
6	PROSPECT2	1jdha	0.080	0.889	1.520	threading_6	NDEDQVVVNKHAIMRSPQMVSAITMQNTNDVETAREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIYKNKMMVCQVGGVRTVLRAGDREDITEPAICALRHLTSRHQEA---------------------------EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREGAIPRLVQLLVRAHQD-TQFVEGVRMEEIVEGC---TGALHILARDVHIRGLNTIPLFVQLLYSPI----------ENIQRVAAGVLCEL-----AQDKEAAEAIEAEGA------TAPLTELLHSRNEGVATRMS
7	PPA-I	2o9lA	0.413	0.132	1.065	threading_7	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMLTQGELMKLIKEIVENEDKRKPYSDQEIANILKEKGFKVARRTVAKYREMLGIPSSRERRI--
8	HHPRED-l	2ahq_A	0.373	0.140	4.200	threading_8	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TYSLRTFFVRE----SAEGLTQGELMKLIKEIVENEDKRKPYSDQEIANILKEKGFKVARRTVAKYREMLG-----------
9	HHPRED-g	2ahq_A	0.388	0.140	4.698	threading_9	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TYSLRTFFVR----ESAEGLTQGELMKLIKEIVENEDKRKPYSDQEIANILKEKGFKVARRTVAKYREMLG-----------
10	SAM-T99	2k9mA	0.228	0.258	2.191	threading_10	--------------------------------------EELQQNIKLEL------------------------------------------------------------------------------------EGKEQELALELLNYLNEKGFLSKSVEEISDVL---RCSVEELEKVRQKVLRLEPLGVCSKDVWEFLELQIEEIYPEEE-----------------------------------------------------------------------------------------EILKKALRDLRGKKLKPEIKGKLS-----------------------------------------------------------------------------------------------------------------------------------------RLRLFPLSSSAEK---

Predicted Tertiary Structure


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TM-score=0.601 to 2vglB SCOP code=i.23.1.1	TM-score=0.359 to 2cfxA SCOP code=a.4.5.32	TM-score=0.361 to 1i1gA SCOP code=a.4.5.32	TM-score=0.356 to 1i1gA SCOP code=a.4.5.32	TM-score=0.369 to 1f9nB SCOP code=a.4.5.3