Template-based Modeling Results for RODZ_ECOLI

Submitted Primary Sequence

>Length 337
MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELLPGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDRKAQQEEITTMADQSSAELSSNSEQGQSVPLNTSTTTDPATTSTPPASVDTTATNTQTPAVTAPAPAVDPQQNAVVSPSQANVDTAATPAPTAATTPDGAAPLPTDQAGVTTPVADPNALVMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEQSPAQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELLPGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDRKAQQEEITTMADQSSAELSSNSEQGQSVPLNTSTTTDPATTSTPPASVDTTATNTQTPAVTAPAPAVDPQQNAVVSPSQANVDTAATPAPTAATTPDGAAPLPTDQAGVTTPVADPNALVMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEQSPAQ
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCEECCCCCCCCCCCEEEEEECCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELLPGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDRKAQQEEITTMADQSSAELSSNSEQGQSVPLNTSTTTDPATTSTPPASVDTTATNTQTPAVTAPAPAVDPQQNAVVSPSQANVDTAATPAPTAATTPDGAAPLPTDQAGVTTPVADPNALVMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEQSPAQ
5433223343322210120220145131213101320213220021023221221121000200020004105012320020024313242242232322222444443322121001111000111212222333323333222223322232223233232222322222332222223222322223232222222222232333222222323232222222222222322222323322222322322100020213010102123122002112544120202232101020001200101132220202411422100101023343437
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELLPGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDRKAQQEEITTMADQSSAELSSNSEQGQSVPLNTSTTTDPATTSTPPASVDTTATNTQTPAVTAPAPAVDPQQNAVVSPSQANVDTAATPAPTAATTPDGAAPLPTDQAGVTTPVADPNALVMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEQSPAQ
1	PROSPECT2	1mv3A	0.077	0.614	1.820	threading_1	DGSPAATPEIRVNH------------------------------------------------------------------------EPEPAGGATPGATLPKSPSQLRKGP----------------------------------------PVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDY-----TATDTDELQ--LKAGDVVLVIPFQNPE--EQDEGWLMGVKESDWNQHKKLEKENFTERV---------P
2	PROSPECT2	2eyzA	0.092	0.807	1.668	threading_2	MAGNFDSEERSSWYWG---------------------RLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALL--------EFYKIHYLDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQ------------------------------WEGECNGKRFPFTHVRLLDQ------QNPEEDFS
3	SPARKS	3fyma	0.256	0.243	2.117	threading_3	------------KTVGEALKGRRERLGMTLTELEQRTGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASVVNIEPNQLIQAHQDEIPSNQAEW---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4	PPA-I	2tmaA1	0.091	0.457	1.260	threading_4	----------------------------------------------------------------------------------------MDAIKKKMQMLKLDKENALDRAE-------------QAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHI----------------------------------------------------------------------------------
5	PPA-I	3fymA	0.256	0.243	1.746	threading_5	------------KTVGEALKGRRERLGMTLTELEQRTGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASVVNIEPNQLIQAHQDEIPSNQAEW---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6	PROSPECT2	1g9kA	0.092	0.970	1.664	threading_6	GTS----------SAFTQIDNFSHFYDFTVDQVADQLTRSPVGYASRGLGTFSQFSALQQAKLSLESWADVAKVSASNGGAAFAYLPNSSRKGESWYLINKDYQVNKTPGEGNYGRQTLTHEIGHTLGLSHPGDYNPTYRDAVYAEDTRAYSVMSYWSEKNTGQVFTKTGEGAYASANLETRADDTVYGFNSTADRDFYSATSSTDKLIFSVWDGGGNDTLDFSGFSQNQTAGSFSDVGGMTGNVSIAQGVTIENAIGGSGNDLLVLKGGAGNDIIYGGGGAGAVSDSTPKAADIIKDFQSGFDKIDLGGLNFVDAFTGHAGNAGSLQVDFSGQGVA
7	HHPRED-l	2wus_R	0.195	0.258	2.828	threading_7	--------SEKWKELGETFRKKREERRITLLDASLFTNINPSKLKRIEEGDLKGLDAEVYIKSYIKRYSEFLELSPDEMLKLYEEGKEEVAEEVE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8	PPA-I	1mv3A	0.096	0.588	1.235	threading_8	-------------------------------------------------------------------------------------DGSPAATPEIRVNHEPEPAGGATPGATL-----------PKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMDYTATDTDELQLKAGDVVLVIPFQNLMGVKESD---WNQHKKLEKCRGVFPENFTERVP----------------------------------------
9	HHPRED-g	3fym_A	0.259	0.240	2.669	threading_9	------------KTVGEALKGRRERLGMTLTELEQRTGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASVVNIEPNQLIQAHQDEIPSNQAW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10	MUSTER	1cp9B	0.100	0.858	0.909	threading_10	KNYPASDLFAGSADRVKEIDNRIEAYD----------KLTADDMWAILQQTSRVDLNHRLFTPFLTQATQGLNDNSVKLVSMLQQ-----------DGINQLSSDGKHYIHPGSAILDIWLKEMLKATL------GQTVPAPFDKWYLASGYETTQEGPTGSLNISTGAKLLYESLLEDKSPISQSIDLFSGQPQNDVIRKTLNTTYQKMIEKYGDNPANWQTPATALTFRENNFFGIPQALPQENFHQNEYH-----NRGTENDLIVFTEEGVSAWDVVAPGQSGFISPQGKPS------------YQ----DQLSLYQQFGKKPLWLNVAPYIES

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.472 to 1y7yA SCOP code=a.35.1.3	TM-score=0.480 to 1mv3A SCOP code=b.34.2.1	TM-score=0.472 to 2fo0A SCOP code=b.34.2.1	TM-score=0.439 to 1praA SCOP code=a.35.1.2	TM-score=0.439 to 1praA SCOP code=a.35.1.2