Template-based Modeling Results for RNFE_ECOLI

Submitted Primary Sequence

>Length 231
MSEIKDVIVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLATTLVLTLTNLTISTLRHWTPAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAFAAKKGPALSALDGFSIGMGATCAMFVLGSLREIIGNGTLFDGADALLGSWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAGKYLIDERMKKRRAEAAAERALPNGETGNV
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSEIKDVIVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLATTLVLTLTNLTISTLRHWTPAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAFAAKKGPALSALDGFSIGMGATCAMFVLGSLREIIGNGTLFDGADALLGSWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAGKYLIDERMKKRRAEAAAERALPNGETGNV
CHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCEEEECCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSEIKDVIVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLATTLVLTLTNLTISTLRHWTPAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAFAAKKGPALSALDGFSIGMGATCAMFVLGSLREIIGNGTLFDGADALLGSWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAGKYLIDERMKKRRAEAAAERALPNGETGNV
453011111200021000001000000000012202100010000000100010000002311122010000000000001002100210010002000000000000000001010012322202000100000000000000000001002202013002001020031020100321210100220100000000000011002221343333222342223143244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSEIKDVIVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLATTLVLTLTNLTISTLRHWTPAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAFAAKKGPALSALDGFSIGMGATCAMFVLGSLREIIGNGTLFDGADALLGSWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAGKYLIDERMKKRRAEAAAERALPNGETGNV
1	PROSPECT2	1r2fA	0.083	0.987	1.282	threading_1	IAAEQQLTIRTGLTLLDTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEPPLQRKAQIILAHYVDEPLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYQIALQKLSAIEREELK--LFALDLLMELYDNEIRYTEALYAETGWVND-VKAFLCYNANKALMNLGYEALFPPEMADVAALSP
2	PPA-I	1pw4A2	0.107	0.848	1.283	threading_2	PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF----------GWDGGF-----------MVMI---GGSILAVILLIVVMIGEKRRHEQLLQELVP-----------
3	PROSPECT2	3a0oA3	0.095	1.000	1.236	threading_3	NSEQLSAFADAVAKDPGWAEFYEKSVEPWTLWRQMYIDCQEVIYAIRHLAIADASRKWLLAVNDEAGFRVVVALAWGYDWDERRTVRSVLLERTREVADHVIAVRSLSAVLTPACIALQGESDEAGEWLDYTVEFLGMAYLIEAANLIRSYIGYDLYQRPFFQNTGRFPLYTKARRANFGDDSTLGDLPGLKLGYNVRQFAGVTYFDHIKADATGTEMAPQVEAVSPADLP
4	PROSPECT2	1h0oa	0.062	0.970	1.231	threading_4	LKPDERHFISHVLAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRIEQEFLTEALPVKLIGMN-----CTLMKQYIEFVADRLMLELGFNKIFRVENPFDFME--
5	PROSPECT2	3mmiA	0.065	1.000	1.211	threading_5	LLMDLNCYTLEVTEGYLGPIHVITTVVSSLVRNGLLIQSTMLGGIFWLSNLSRLPAFAANQKTLYDKLTLIYLETLKVFDKIYSTWLVKFMKHASAHIEIFDMVFAKLFTFLNEFDAVLCKFQVVDSMHTKIFNDTLKYLNVMLFNDLITKCPAEPRIEDVRPNLIQIIQAVKILQLKISNLNEFKLYALNPAQIQAILLEILNYLANVIKRENLSLPGKMEIMLSAQFDS
6	PROSPECT2	2bkuB2	0.105	0.991	1.211	threading_6	TDTVAETSASISTFVMDKLGQTMS--VDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFIEDDVFYAISALAASLGKGFEKYLETFSPYLLVSITAVGFIADISNRRELKPAVLSVFGDNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEAMFPDGSIKQFYGQKRQLSL
7	MUSTER	1pw4A2	0.130	0.831	0.831	threading_7	PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPAAGFTGLFGYLGGSVAASAIVGYTVDFFG--------------WDGG-----------FMVMI---GGSILAVILLIVVMIGEKRRHEQLLQELVP-----------
8	SPARKS	2xwub	0.090	0.918	0.892	threading_8	VCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQA------------SALDLTRQLVHIFAHEPAHF---PPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRPDLFLCERLDVKAVFQCAVLALKAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGG----QASRSLMDCFADILFALNKHCFSLLSMQPPGFPSARLSPEQKDTF
9	PROSPECT2	1pw4A2	0.111	0.823	1.162	threading_9	TAK--QIFMQYVLPNKLLWYIAIANVFVYLLRFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPAAGFTGLFGYLGGSVAASAIVGYTVD---------------------------FFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQELVP------------
10	PPA-I	2otoB	0.102	0.593	0.992	threading_10	------------AANNPAIQNIRLRHENKDLKARLENAEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQRLEKELEEKKEALELAIDQASRDYHRATALEKE---LEEKKKALELAIDQASQDYNRANVLEKE-------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.849 to 1uzrB SCOP code=a.25.1.2	TM-score=0.855 to 1pw4A SCOP code=f.38.1.1	TM-score=0.536 to 1j0nA SCOP code=a.102.3.2	TM-score=0.859 to 1h0nA SCOP code=a.25.1.2	TM-score=0.447 to 2hyeC SCOP code=a.4.5.34