Template-based Modeling Results for RNFD_ECOLI

Submitted Primary Sequence

>Length 352
MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLWFFGWGTLVQILLASVSALLAEALVLKLRKQSVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQVIFSGHTASGGDMNTLRLGIDGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGAGWQWVNLAWLAGGVWLLWQKAIRWHIPLSFLVTLALCAMLGWLFSPETLAAPQIHLLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIRSFGGYPDGVAFAVLLANITVPLIDYYTRPRVYGHRKG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLWFFGWGTLVQILLASVSALLAEALVLKLRKQSVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQVIFSGHTASGGDMNTLRLGIDGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGAGWQWVNLAWLAGGVWLLWQKAIRWHIPLSFLVTLALCAMLGWLFSPETLAAPQIHLLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIRSFGGYPDGVAFAVLLANITVPLIDYYTRPRVYGHRKG
CEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLWFFGWGTLVQILLASVSALLAEALVLKLRKQSVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQVIFSGHTASGGDMNTLRLGIDGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGAGWQWVNLAWLAGGVWLLWQKAIRWHIPLSFLVTLALCAMLGWLFSPETLAAPQIHLLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIRSFGGYPDGVAFAVLLANITVPLIDYYTRPRVYGHRKG
2102101012021332002000000000000000100000000000000000001001000120242212211421100000000000011201110000000000000120110002110000000000000000011121111131222120011001000112112102120021001011300001003121322111210100101111010001100000000000000122002010000000000000000110113211000000000000000000001211012133010000000000000020010111000000000000000012102232223445
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLWFFGWGTLVQILLASVSALLAEALVLKLRKQSVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQVIFSGHTASGGDMNTLRLGIDGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGAGWQWVNLAWLAGGVWLLWQKAIRWHIPLSFLVTLALCAMLGWLFSPETLAAPQIHLLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIRSFGGYPDGVAFAVLLANITVPLIDYYTRPRVYGHRKG
1	PROSPECT2	1xm9A	0.088	0.963	1.644	threading_1	VQYLSSQDEKYQDESAKQQVYQLGGICKLVDLLQNVQQAAAGALRNLVLETRRQNGIREAVSLLRRTG------NAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCVVDPEVFFNATGCLR---NLSSADAGRQTMRNYSGLIDSLNCVAASRCDDKSVENCMCVLHNLSYRPTRYRQLEYNALPEEETNPKGSGWLYHSDAIRTYLNLMGATLEACAGALQNLTASKGLMSSGMSQLIGGLPQIARLLQSGNSDVVRSGASLLSNMSFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLM----ASQPQLAKQYFSSSMLNNIINLCRSSASMWSSKE
2	HHPRED-g	3gia_A	0.123	0.901	1.018	threading_2	--LK-------NKKLSLWEAVSMAVGVMIGASFVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSKAIGDNITGALSILLWMSINAPNTFNIAITEIGIVAFFGSKAVGRA-EFFIVLVKLLILGLFAGLITHPSYVIPD-LAPSAVSGMIFASAIFFLSY--MGF--GVITNASEHAIGNLPIDELIKAS-------ENALAVAAK-PFLGNLGFLISIGALFGGANVAYERKVWFKSTEGLYITSALGVLFAL-LF---NMEGVASITSAVFMLSHYILID------EVGGRKEI--VIFSFIVVLGVFLLLYRFVFYGIIATFIGVLIFEIIYRKVTKRTFSNN
3	PROSPECT2	1ejlI	0.077	0.955	1.592	threading_3	VKGINSNNLESQKQPPIDNIIRAGLIPKFVSFLSPIQFESAWALTNITKAVVDGGAIPAFISLLASP-------HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN---LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNI-----TAGRQDQIQQVVNHGLVPFLVGVLSKADFTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILISNIFQAALDKIEALQRHENESS
4	PROSPECT2	3a6pA1	0.100	0.935	1.587	threading_4	VTVMMDPNSTQRYRLEALKFCEEFCVPCGLRLAAIVRHFGLQILEHVVKFLEKVYLKNSVMELIANGTLNILEEENHSRIVVEMIKREWPQHWPETQTELVMFILLRLAEDVVTFQTLPPIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITA------ENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHY-----------------ILSAAQTADGGGLVEKHYVFLKRLCQVLCALLLGADSDVETPSNFGKYLRSSTQMTWGALFRHEILSRDPLLLAIIYLRASMTNLVKMGFPSKTDSPTF
5	PROSPECT2	1jdha	0.115	0.986	1.583	threading_5	AVTKLLNDEDSKKEASRHAIMPQMVSAIVRTMQNSVLFYAITTLHNLLLAVRLAGGLQKMVALLNKTNVKFLAITTDCLGPQALVNIMRTYTYEKLLWTTSRVLKVLGMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQEGMEGLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP---PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQFVEGVRMEEIVEGCTGALHLFVQLLYSPIENIQRVAALCELATAPLTELLHSRNEGVATS
6	PROSPECT2	1ee4a	0.085	0.940	1.535	threading_6	QELSREHRPPIDRENQPEMLQLEAAWALTSAQTKVVVDADAKEQAIWALGNVAGDSTDYRDYVLQCNAFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL-------IYSMDTETLVDACWAIS---YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQR---PDIIRYLVSQGCIKPLCDLLEIAD--------NRIIEVTLDALENILKMGGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKA
7	MUSTER	3zuxA	0.128	0.818	0.805	threading_7	ILSKI-----------SSFIGKTFSLWAALFAAAAFFAPDTFKWAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQF-------AIMPATAWCLSKLL------------LPAEIAVGVILVGCCP---------------GGTASNVMTYLARGNVA----LSVAVTSVSTLTSLTPAIFLMLAGEM----LEIQAAGMLM-----SIVKMVLLPIVLGLIVHKVLGLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAALPYDAQKALTIEVGSGLAAALAAAHAAAPVPGALFSVWHNISGSLLATYW------AAKA
8	SPARKS	3m1ic	0.113	0.926	0.893	threading_8	LVYLTHLNV-----IDTEEIMISKLARQISWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVV--GQYPRFLKAHWNFLRTVILKLFEF-MHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTAD-LQPQQVHTFYKACGSEERSVAERNRLLSDLMQLPNMAWDTIVEQSPTLLLDSETVKIIANIIKTNVA--------VCTSMGADFYPQLGHIY------YNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVVLVEPLLNAVLEDY-MNNVPDARDA
9	PROSPECT2	1gw5b	0.097	0.994	1.460	threading_9	SKYFTTNKKELNNEKKEKRKEAVKKVIAASSLFPDVVNLELKKLVYLYLMNYAKSQPDMAIMAVN--SFVKDCEDPNPLIRALVRTMGCIRVDKITEYLCEPKTAAVCVAKLHDINAQMVEDQGFLDSLRNAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVIMIRLASQANIAQVLAELFVRKAVRAIGRCAIKVYPNKYESIIATLCENARAAMIWIVGEYAERIDNADELLQVQLTLLTAIVKLFLKKPSETQEV
10	PPA-I	2vpyC	0.145	0.688	0.954	threading_10	--AEFYGLPNAQEFWHWTNALHFVLVGLAGGVALLAALLHLKAEARRYTLYALMLIALDLFILWAESPARFRFTHIWLF-------LSFHPTSPIWWGAWGLGLGFLTGGLLYLGKGSQALAWALLVFSLVALSYPGLALAVNLNRPLWNGLMAGLFPLTALVLALLKSPWALFPLRVL----AGASLLLALLYPLTLPPEARGHLLEEA---------GFWYGLFLLLGLGTFWQERLAPW---AGLLAAAGLRALLVLAGQWQGL-------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.415 to 1h6gA SCOP code=a.24.9.1	TM-score=0.819 to 1xm9A SCOP code=a.118.1.24	TM-score=0.602 to 2q6hA SCOP code=f.54.1.1	TM-score=0.774 to 1t5jA SCOP code=a.209.1.1	TM-score=0.770 to 1ialA SCOP code=a.118.1.1