Template-based Modeling Results for RNFC_ECOLI

Submitted Primary Sequence

>Length 740
MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLPVHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIPRDGWADYRTRSREELIERIHQFGVAGLGGAGFPTGVKLQGGGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSNDISLRVIPTKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRHLLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKSAAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQAELQQTNDAATVADPRKTAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKREQQPANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAVPEEQVDPRKAAVAAAIARAQAKKAAQQKVVNED
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLPVHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIPRDGWADYRTRSREELIERIHQFGVAGLGGAGFPTGVKLQGGGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSNDISLRVIPTKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRHLLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKSAAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQAELQQTNDAATVADPRKTAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKREQQPANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAVPEEQVDPRKAAVAAAIARAQAKKAAQQKVVNED
CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCEEECCCEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCEEECCCCEEEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHHCCCHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLPVHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIPRDGWADYRTRSREELIERIHQFGVAGLGGAGFPTGVKLQGGGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSNDISLRVIPTKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRHLLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKSAAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQAELQQTNDAATVADPRKTAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKREQQPANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAVPEEQVDPRKAAVAAAIARAQAKKAAQQKVVNED
53311211332301203100102313221321202202122200000331111302100122220221210021312111211212221222121222121110210122213112100332212213221232002102301011111011111131322243110000101201120111120023102100200200020040210000023222300200110034132010100223111200100011021231231221131000000000000012002222210210000103212311001021101032002201313222200001011101013112000022110000000220022143311130010120020011011012213123311100210010020000110021211112002202110111224334123122312223122332211323223202332224333212201120223323222312242233232110011231221213234233332332222233442123102131212334333232333442333320021011212223244332323343422232101201113121342343323233333233331012102121322444333232333332213100120011213233343432322343422232111110113122232233323344
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLPVHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIPRDGWADYRTRSREELIERIHQFGVAGLGGAGFPTGVKLQGGGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSNDISLRVIPTKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRHLLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKSAAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQAELQQTNDAATVADPRKTAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKREQQPANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAVPEEQVDPRKAAVAAAIARAQAKKAAQQKVVNED
1	MUSTER	3i9v1	0.218	0.503	1.694	threading_1	--------------------------------------------------------------------------------TGPILSGLDPRFERTLYAHVGK-------EGSWTLDYYLRHGGYETLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPKKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARDLHVHRGAGAYICGEETALMNSLEGLRANPPPFPAQSGTTINNVETLASVVPIMERGADWGMKLYQISGP-VKRPGVYELPMGTTFRELIYEAGGPLEPIQAIIPGGSSTPPLPFTLDTPMMLGTGGVILIPERVSTRFYAHESCGKCTPCREGVAGFMNLFAKIGTGQGEEKDVENLEALLPLIEGRSCPLADAAVWPVKGSLRHFKDQYLALAREKRPVPR---------PSLWR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2	SPARKS	2fug1	0.221	0.496	1.923	threading_2	-------------------------------------------------------------------------------------SGLDPRFERTLYAH-------VGKEGSWTLDYYLRHGGYETLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPKKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARALHVHRGAGAYICGEETALMNSLEGLRANPPPFPAQSGTTINNVETLASVVPIMERGADWGMKLYQISGP-VKRPGVYELPMGTTFRELIYEAGGPLEPIQAIIPGGSSTPPLPFTLDTPMMLGTGGVILIPMWNLTRFYAHESCGKCTPCREGVAFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSCPLADAAVWPVKGSLRHFKDQYLALARE-KRPVPRPSLWR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	2fug1	0.204	0.496	2.507	threading_3	-----------------SGLDPRFERTLYAHVG---------------------------------------------------------------------------KEGSWTLDYYLRHGGYEVLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWPKDDGKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKESFDLHVHRGAGAYICGEETALMNSLEGLRANPRLKPPGKPTTINNVETLASVVPIMERGQSKGMKLYQISGP-VKRPGVYELPMGTTFRELIYEWAGGPLEPQAIIPGGSSTPPLPFTQAKGSMLGTGGVILIPEWNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGGQGEEKDVENLEALLPLIEGRFCPLADAAVWPVKGSLRHFKDQYLALAR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EKRPVPRPSLW------------------------------------------------------------R
4	PPA-I	3i9v1	0.212	0.503	3.576	threading_4	--------------------------------------------------------------------------------TGPILSGLDPRFERTLYAH-------VGKEGSWTLDYYLRHGGYETLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWPKDDGKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARDLHVHRGAGAYICGEETALMNSLEGLRALKPPFPAQSGTTINNVETLASVVPIMERGQSKGMKLYQISGP-VKRPGVYELPMGTTFRELIYEWGGPLEPIQAIIPGGSSTPPLPFTLDTPMMLGTGGVILIPMWNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGGQGEEKDVENLEALLPLIEGRSCPLADAAVWPVKGSLRHFKDQYLALAREKRPVPRPSLWR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	HHPRED-l	3i9v_1	0.219	0.493	8.774	threading_5	--------------------------------------------------------------------------T---GPIL---S----GLDPRFLYAHVG------KEGSWTLDYYLRHGGYETAKKKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPGKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEAFDLHVHRGAGAYICGEETALMNSLEGLRAPRLPFPAQSGLTINNVETLASVVPIMERGADWFMKLYQISGP-VKRPGVYELPMGTTFRELIYWAGGPLEPIQAIIPGGSSTPPLPFTLDTPMSYGTGGVILIPERVLTRFYAHESCGKCTPCREGAGFM---VNLFAKIGTGDVENLEALLPL-IEGRSFCPLADAAVWPVKGSLRHFKDQYLALAR-EKRP-VPRPS-LWR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6	HHPRED-g	3i9v_1	0.224	0.482	7.599	threading_6	-----------------------------------------------------------------------------------------------TGPILSGLDPRFRTLYAWTLDYYLRHGGYETAKKKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPGKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEAFDLHVHRGAGAYICGEETALMNSLEGLRAPRLPFPAQSGLTINNVETLASVVPIMERGADWFMKLYQISGP-VKRPGVYELPMGTTFRELIYWAGGPLEPIQAIIPGGSSTPPLPFTLDTPMSYGTGGVILIPERVLTRFYAHESCGKCTP----CREGVAGFMVNLFAKEKDVENLEAL--LPLIGRSFCPLADAAVWPVKGSLRHFKDQYLALAREKRPVRPSLWR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7	SP3	2fug1	0.223	0.496	0.917	threading_7	-------------------------------------------------------------------------------------SGLDPRFERTLYAH-------VGKEGSWTLDYYLRHGGYETLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPKKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARDLHVHRGAGAYICGEETALMNSLEGLRANPPPFPAQSGTTINNVETLASVVPIMERGADWGMKLYQISGP-VKRPGVYELPMGTTFRELIYEAGGPLEPIQAIIPGGSSTPPLPFVLDTPMMLGTGGVILIPMWNLTRFYAHESCGKCTPCREGVAFMVNLFAKIGTGQGEEKDVENLEALLPLIEGSFCPLADAAVWPVKGSLRHFKDQYLALARE-KRPVPRPSLWR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8	SAM-T99	3i9v1	0.220	0.454	8.344	threading_8	------------------------------------------------------------------------------------------------------------------LDYYLRHGGYETAKRKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPKKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKFSFDLHVHRGAGAYICGEETALMNSLEGLRANPRLKPWGKPTTINNVETLASVVPIMERGADWGMKLYQISGP-VKRPGVYELPMGTTFRELIEWAGGPLEPIQAIIPGGSSTPPLPFTLDTPMMLGTGGVILIPERVSMVFYAHESCGKCTPCREGVAGFMVLFAKIGTGQGEEKDVENLEALLPLIGRSFCPLADAAVWPVKGSLRHFKDQYLALAREKR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	MUSTER	3i9v11	0.225	0.282	0.929	threading_9	--------------------------------------------------------------------------------TGPILSGLDPRFERTLYAHVGK-------EGSWTLDYYLRHGGYETLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPKKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARDLHVHRGAGAYICGEETALMNSLEGLRANPPPFPAQSGTTINNVETLASVVPIMERGADWFAQM------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10	SPARKS	2j68a	0.121	0.849	0.723	threading_10	VAQVRSEMSVNKLAET---INKAELAGDSSSG---KLSLERDIITIASKNLQQGVFRLLVLGD---------MKRGKSTFLNALIGENLLPSTAVLTVLRYGPEKKVTIHFNDGKSQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDS------PGLN----------DTEARNELSLGYVNNCHAILFVMQPCTLGERRYLENYIKG-RGLTVFFLVNA---------WDQVR-ESLIDPDDVEEL------QASENRLRQVFNA---NLAEYCTVEGQNIYDERVFEL----SSIQALRRRLKNPQA-------------DLDGTGFPKF----------MDSLNTFLTRER-AI-AELRQVRTLARLACNHTREAVARRIPLQDVNELKKRID---------SVEPEFNKLTGIRDEFQKEIINTRDTQARTISESFRSYNTFENDFLRYQPELNLFDFLSSGKREAFNAALQKFEQYITDKSAAWTLTA-----EKDINAAFKELSRSASQYGASYNQITDQITEKLTGKDVEDNSPGWAKWAMGLLSLSKGNLAGFALAGITAVTGILLGPIGFALLGLGVGFLQADQA----RRELVKTAKKELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRINDD----------IVSRKSELDNLVKQKQTREINRE----SEFNRLKNLQEDVIAQLQKIEAAYSNLLAYYSHH

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.403 to 1h7gA SCOP code=c.68.1.13	TM-score=0.400 to 1h7gA SCOP code=c.68.1.13	TM-score=0.405 to 1h7gA SCOP code=c.68.1.13	TM-score=0.406 to 1xhbA SCOP code=b.42.2.1	TM-score=0.405 to 1h7gA SCOP code=c.68.1.13