Template-based Modeling Results for RNFA_ECOLI

Submitted Primary Sequence

>Length 193
MTDYLLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLATTFVMTLASICAWLIDTWILIPLNLIYLRTLAFILVIAVVVQFTEMVVRKTSPVLYRLLGIFLPLITTNCAVLGVALLNINLGHNFLQSALYGFSAAVGFSLVMVLFAAIRERLAVADVPAPFRGNAIALITAGLMSLAFMGFSGLVKL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTDYLLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLATTFVMTLASICAWLIDTWILIPLNLIYLRTLAFILVIAVVVQFTEMVVRKTSPVLYRLLGIFLPLITTNCAVLGVALLNINLGHNFLQSALYGFSAAVGFSLVMVLFAAIRERLAVADVPAPFRGNAIALITAGLMSLAFMGFSGLVKL
CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTDYLLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLATTFVMTLASICAWLIDTWILIPLNLIYLRTLAFILVIAVVVQFTEMVVRKTSPVLYRLLGIFLPLITTNCAVLGVALLNINLGHNFLQSALYGFSAAVGFSLVMVLFAAIRERLAVADVPAPFRGNAIALITAGLMSLAFMGFSGLVKL
4520011000000110000020000001000022012000100000000000100010012101231101001000000000000200210022001200300010000001000000001100332131020001000000000000000000122031130021022010000000000000000211244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTDYLLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLATTFVMTLASICAWLIDTWILIPLNLIYLRTLAFILVIAVVVQFTEMVVRKTSPVLYRLLGIFLPLITTNCAVLGVALLNINLGHNFLQSALYGFSAAVGFSLVMVLFAAIRERLAVADVPAPFRGNAIALITAGLMSLAFMGFSGLVKL
1	PROSPECT2	1r2fA	0.094	0.995	1.216	threading_1	IEQQLTIRVFTGLTLLDTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEENPPLQRKAQIILAHYVSDEPLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGY-KYQIALQKLSAIEYAETGWVNDVKAFLCYNAALMNLGYEAL
2	PPA-I	1pw4A2	0.081	0.964	1.167	threading_2	PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF-------MVMIGGSILAVILLIVVMIGEK
3	PROSPECT2	1h0oa	0.125	0.995	1.203	threading_3	KPDERHFISHAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLNAIETMPCVKKKADWALRWIGDKEATYGERVVAFA-AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMQEFLTEALPVKLIGMNCTLMKQYIEFVALMLELGFNKI
4	PROSPECT2	2bkuB2	0.114	1.000	1.144	threading_4	ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSVSITAVGFIADISNSLEEDFRRYSDAMMNVLAVLSVFGDIASNIGADFIPYLNDIMALCVAQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTAREQQKRQLSL
5	PROSPECT2	1pw4A2	0.121	0.943	1.122	threading_5	PNKLLWYIAIANVFVYLLRYGILDWSPTYKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN------RGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDG-----GFMVMIGGSILAVILLIVVMIG
6	PROSPECT2	1kgna	0.089	0.995	1.104	threading_6	MTPQEQLATMRVFTGLTLLDTIQGTVGLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNGDDPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGY-KYQQGVKKLSEAEYDDLGWTEDVKRFLRYNAALNNLGYEGL
7	MUSTER	3zuxA	0.184	0.984	0.732	threading_7	IMPATAWCLSKLLAEIAVGVILVGCCP--GTASNVMTYLAVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAGMQGLAAALAAAHFVAVPGALFSGSL-L
8	SPARKS	2gena	0.105	0.839	0.911	threading_8	KDEILQAALACFSEH--------GVD---ATTIEIRDRSGAS-------------IGSLYHHFGN---KERIHGELYLAGIGQYAALLEAGFARAEETVRLLVTSYIDWVVAN---PDWARFILHSRGRVEAGELGERLRADNQAHFARIHAALAGYRAEGLFREPDDCF-ASVVIGPAHDLARQWLAGRTRV
9	PROSPECT2	1t33A	0.122	0.974	1.087	threading_9	MSQLIAAALAQFGEYGLDIAALAGQNIYFGSKEDLYLACAQWIADFLGEKFRPHAEKAERLFSQPAPDRDAIRELILLACKNMIMLLTQEDTVNLSKFISREQLVHEQVIDPLHTHLTRLVAAYTGCDANDTRMILHTHALLGEVLAFRLKETILLRTGWPQFDEEK----AELIYQTVTCHIDLILHGLTQ-
10	PPA-I	2otoB	0.117	0.710	0.963	threading_10	------------AANNPAIQNIRLRHENKDLKARLENAEVAGRDFKRAEELEKAKQALEDQR--KDLETKLKELQQDYDLAKESTSWDRQRLEKELEEKKEALELAIDQASRDYHRATALEKELEEKKKALELAIDQASQDYNRANVLEKE------------------------------------------

Predicted Tertiary Structure


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TM-score=0.779 to 1uzrB SCOP code=a.25.1.2	TM-score=0.904 to 1pw4A SCOP code=f.38.1.1	TM-score=0.738 to 1h0nA SCOP code=a.25.1.2	TM-score=0.804 to 3ea5B SCOP code=a.118.1.1	TM-score=0.875 to 1pw4A SCOP code=f.38.1.1