Template-based Modeling Results for RLUF_ECOLI

Submitted Primary Sequence

>Length 290
MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR
CCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCEEECCEECCCCCEECCCCEEEECCEECCCCCCCCEEEEEEECCCCEEECCCCCCCCCCEEECCCCCCEEECCCCCCCCEEEEEEECCHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHCCCEECCEEEEEEEEEECCCEEEEEEEEECCCHHHHHHHHHCCCEEEEEEEEEECCEECCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR
55342223012000301100121022004211020212202222202331102022110324423210000001010000113234242000003233100000201320200000001020012011123312120001025302330020012102022220110202233321020001201221022003402120120100101202023032120110233102201311332233243423232422223432232332234224222323322222444438
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR
1	MUSTER	3dh3B	1.000	0.831	4.366	threading_1	--PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEV-----------------------------------------------
2	SPARKS	1kska	0.290	0.772	4.760	threading_2	----GSHRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRAAFKLLPEHDVAYDGNPLAQQHGP---RYFLNKPQGYVCSTDDPDHPTVLYFLDEPWKLHAAGRLDIDTTGLV-LTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNDLTKPAVLEVITPTQVRLTISEGRYHQVKRFA-AVGNHVVELHRERIGGITLADLAPGEYRPLTEEEIASVV---------------------------------------------------------
3	PROSPECT2	1vioA	0.296	0.779	4.611	threading_3	-----SLRLDKFIAENVGLTRSQATKAIRQSAVKINGEIVKGSVQISQEDEIYFEDELLTWIEEGQ--YFMLNKPQGCVCSNDDYPTIYQFFDYPLAGKLHSAGRLDVDTTGLVLLTDDGQWSHRITSPKHHCEKTYLVTLADPVEENYSAACAEGILLRGEPTKPAKLEILDDYNVNLTISEGRYHQVKRMFAALGNKVVGLHRWKIGDVVLDSLEEGEYRPLTQSEIEKL---------------------------------------------------------V
4	PPA-I	3dh3B	1.000	0.831	8.841	threading_4	--PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEV-----------------------------------------------
5	HHPRED-l	3dh3_A	1.000	0.828	6.199	threading_5	---DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEV-----------------------------------------------
6	HHPRED-g	3dh3_A	1.000	0.828	6.047	threading_6	---DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEV-----------------------------------------------
7	SP3	1kska	0.286	0.772	4.773	threading_7	----GSHRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRAAFKLLPEHDVAYDGNPLAQQHGP---RYFLNKPQGYVCSTDDPDHPTVLYFLDEPWKLHAAGRLDIDTTGLVL-TDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNELTKPAVLEVITPTQVRLTISEGRYHQVKRFA-AVGNHVVELHRERIGGITLDALAPGEYRPLTEEEIASVV---------------------------------------------------------
8	SAM-T99	3dh3B	1.000	0.831	7.523	threading_8	--PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEV-----------------------------------------------
9	MUSTER	1vioA	0.304	0.772	3.632	threading_9	-----SLRLDKFIAENVGLTRSQATKAIRQSAVKINGEIVKGSVQISQEDEIYFEDELLTW--IEEGQYFMLNKPQGCVCSNDD--YPTIYQFFDYPGKLHSAGRLDVDTTGLVLLTDDGQWSHRITSPKHHCEKTYLVTLADPVEENYSAACAEGILLEKEPTKPAKLEILDDYNVNLTISEGRYHQVKRMFAALGNKVVGLHRWKIGDVVLESLEEGEYRPLTQSEIEKLV---------------------------------------------------------
10	SPARKS	2gmla	0.983	0.593	3.860	threading_10	-----------------------------------------------------------------DLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIR-GSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIR-RCEHFGYEVKKLERTRIN-VSLSGIPLGEWRDLTDDELIDLFKLIENSS--------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.711 to 1vioA TM-score=0.998 to native SCOP code=d.265.1.3	TM-score=0.711 to 1vioA TM-score=0.998 to native SCOP code=d.265.1.3	TM-score=0.800 to 1kslA TM-score=0.660 to native SCOP code=d.265.1.3	TM-score=0.865 to 1vioA TM-score=0.726 to native SCOP code=d.265.1.3	TM-score=0.711 to 1vioA TM-score=0.998 to native SCOP code=d.265.1.3

Experimental Structure

Download 3dh3B

SCOP code=d.265.1.3