Template-based Modeling Results for RLUD_ECOLI

Submitted Primary Sequence

>Length 326
MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRADFEEHKDEVDWL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRADFEEHKDEVDWL
CCCCEEEEEEECHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEECCCCCCCCCCEEEEECCCCEEEEEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHEEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRADFEEHKDEVDWL
55432202020233222320120013203310211022003222011222102324240231110102032333242223303010001121000001032000000111230000100010023023222000002013300000000102200220121035331211000001021332010211012123311000015201200010100111420010102022121100000001020000002111133422421232012113303210000000202012121202020201400130031022103323332313
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRADFEEHKDEVDWL
1	MUSTER	2istA	1.000	0.985	4.375	threading_1	-AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIE---RFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRADFEEHKDEVDW-
2	PPA-I	2istA	1.000	0.985	11.944	threading_2	-AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIE---RFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRADFEEHKDEVDW-
3	SAM-T99	2istA	0.997	0.985	8.923	threading_3	-AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIER---FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRADFEEHKDEVDW-
4	SPARKS	1prza	0.930	0.742	5.757	threading_4	--------------------------------------------------------------------------ARFEPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGL-VVAKTVPAQTRLVESLQRREITREYEAVAIGHTA-GGTVDEPISRHPTKRTH--AVHPGKPAVTHYRIEH-FRVHTRLRLRLETGRTHQIRV-HAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHAT-LRLYHPISGI-EEWHAPIPQDVELIE--VRADFEEHKDEVDWL
5	PROSPECT2	1przA	0.917	0.742	3.883	threading_5	--------------------------------------------------------------------------ARFEPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTG-LVVAKTVPAQTRLVESLQRREITREYEAVAIGHT-AGGTVDEPISRHPTKRTHAV--HPGKPAVTHYRIEH-FRVHTRLRLRLETGRTHQIRVHA-HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHAT-LRLYHPISGI-EEWHAPIPQDVELIEVRAD--FEEHKDEVDWL
6	SPARKS	1kska	0.210	0.687	3.408	threading_6	---------------GSHRLDKFIAQQL-GVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYD---GNPLAQQHGPR-----------YFLNKPQGYVCSTDDPD-HPTVLYFL-----DEPVAWKLHAAGRLDIDTTGLVLTDDGQWSHRITSPR---HHCEKTYLVTLESPVADDT----------AEQFAKGVQLHNEKDLTKPAVLEVITP-TQVRLTISEGRYHQVK-RFAAVGNHVVELHRIGGDADLAPGEYRPLEEEIASVV---------------------------------------------------
7	HHPRED-l	1v9f_A	1.000	0.764	7.915	threading_7	----------------------------------------------------------------------------FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRADFEEHKDEVDW-
8	PROSPECT2	1vioA	0.191	0.706	3.123	threading_8	----------------SLRLDKFIAENV-GLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYF-------------EDELLTWIEEGQYFMLNKPQGCVCSNDDYPTIYQFFDYPLAG--------KLHSAGRLDVDTTGLVLLTDDGQWSHRI--TSPKHHCEKTYLVTLAD----------PVEENYSAACAEGILLRGEKEPTKPAKLEILDD-YNVNLTISEGRYHQVKRMFAALGNKVVGLHRWKIGD----------------------------VVLDESLEEGEYRPLTQSEIEKL-----------------V
9	HHPRED-g	1v9f_A	1.000	0.767	6.988	threading_9	----------------------------------------------------------------------------FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRADFEEHKDEVDWL
10	HHPRED-l	1vio_A	0.184	0.699	4.026	threading_10	----------------SLRLDKFIAENV-GLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFED-------------ELLTWIEEGQYFMLNKPQGCVCSNDD---YPTIYQFFDY-----PLAGKLHSAGRLDVDTTGLVLLTDDGQWSHRITSP--KHHCEKTYLVTLADPVEENYSA----------ACAEGILLRGEKEPTKPAKLEILDDYN-VNLTISEGRYHQVKRMFAALGNKVVGLHRIGDVVLDE-SLE--------------------------EGEYRP---LTQSEIEKLV-----------------

Predicted Tertiary Structure


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TM-score=0.538 to 1vioA TM-score=0.972 to native SCOP code=d.265.1.3	TM-score=0.538 to 1vioA TM-score=0.895 to native SCOP code=d.265.1.3	TM-score=0.538 to 1vioA TM-score=0.972 to native SCOP code=d.265.1.3	TM-score=0.538 to 1vioA TM-score=0.895 to native SCOP code=d.265.1.3	TM-score=0.549 to 1vioA TM-score=0.749 to native SCOP code=d.265.1.3

Experimental Structure

Download 2istA

SCOP code=d.265.1.3