Template-based Modeling Results for RLPA_ECOLI

Submitted Primary Sequence

>Length 362
MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEISGADPRFEPLNATANQDYQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEAFDPTQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSNNTKVRIDPIIVAQDGSLSGPGMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPAMVTPQAVSQSASGNFMVQVGAVSDQARAQQYQQQLGQKFGVPGRVTQNGAVWRIQLGPFASKAEASTLQQRLQTEAQLQSFITTAQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEISGADPRFEPLNATANQDYQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEAFDPTQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSNNTKVRIDPIIVAQDGSLSGPGMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPAMVTPQAVSQSASGNFMVQVGAVSDQARAQQYQQQLGQKFGVPGRVTQNGAVWRIQLGPFASKAEASTLQQRLQTEAQLQSFITTAQ
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCEEECCHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEISGADPRFEPLNATANQDYQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEAFDPTQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSNNTKVRIDPIIVAQDGSLSGPGMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPAMVTPQAVSQSASGNFMVQVGAVSDQARAQQYQQQLGQKFGVPGRVTQNGAVWRIQLGPFASKAEASTLQQRLQTEAQLQSFITTAQ
44121000000000001021332333222223222231212312222142222222223212120100202322331211000000033122221120100021101000210211000100113212000010012011132100000300022021232120100000012312221222212222332222222232212202211122313222222222323322212222212222222222122322322222322222222222222222223222322211100100113332202201320043121202022322000000011223210120032024333231100225
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEISGADPRFEPLNATANQDYQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEAFDPTQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSNNTKVRIDPIIVAQDGSLSGPGMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPAMVTPQAVSQSASGNFMVQVGAVSDQARAQQYQQQLGQKFGVPGRVTQNGAVWRIQLGPFASKAEASTLQQRLQTEAQLQSFITTAQ
1	SPARKS	1x60a	0.266	0.218	1.358	threading_1	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LKKTSSSGLYKVQIGAFKVKANADSLASNAEAK-GFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGF-DAIVILES
2	PROSPECT2	1tzlA	0.075	0.989	1.771	threading_2	TVEYQKNIDKFVNVIQGQLSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGSTHWTCATPRFDREQRPLLVKDYKGQRDFQQIPLAASSANTVFDLQNRPNVRNALNSEIESLHIHDLISGDRFEVLTAGAVHNTQLRPNPTNPPLVFCQTVSTELIDSVKSDTIRGTPGELTYSVTYTPGASTNKHPDWWNEKVKNHQHQEDPLPIPFEDPEPQVTTLFQPSHPWHTQIHRDAFSYGAVQQSIDSRLIRTEPKEENKLWFSDKITDAYNPQPTFDFRFPAGRTSKEAEDTDCVSAKIGGFLPGSLPQFELFLGPTLTASLAIKSCEYIKQNFTPSP----FT
3	HHPRED-l	1x60_A	0.269	0.215	3.509	threading_3	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LKKTSSSGLYKVQIGAFKVKANADSLASNAEAK-GFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAG-FDAIVILE-
4	PROSPECT2	3c7eA	0.089	0.959	1.479	threading_4	A-------------TSTTIAKHIGDDYEYNSNGTIKDNSFANLNRNGANGGRGIAKWAGASWAPSIAVKKINGANSGGGIGVLTADSPIGPWTDPIGKPLVTPSTPGMSGVVWLFDPAVFV--DDDGTGYLYAGGGVPGVSNPTWANPKTARVIKLGPDMTSVVGSASTIDAPFSSPMGPFTYRGHFLKNPGAFFGGGGNNHHQTVSSALFGAGKGYRSPHINKLVHNADGSIQEVAANYAGVTQISNLNPYNRVEAETFAWNGRILTEKSTAPGGPVNNQHVTSIQNGDWIAVGNADFGAGGARSFKANVASTLGGKIEVRDGKLVGTLNVPSTGGAQTWREIETAVTGTGTGNLWQFTQR
5	HHPRED-g	1x60_A	0.253	0.218	3.401	threading_5	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LKKTSSSGLYKVQIGAFKVKANADSLASNAEAKG-FDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGF-DAIVILES
6	PROSPECT2	1crua	0.071	0.970	1.454	threading_6	DVP------LTPSQFAKAKSENNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSKELPNQTIIRRYTYNKSTDT-----LEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQGPNSDDEINLIVKGGNYGWPNVAGYKDDSGYAYANYSAAANKSIKDLAQNGVKVAAGVPVTKESEWTGKNFVPPLKTLYTVQDTYNYNDPTCGEMTYICWPTVAPVPSLKRGVIFRIKLDPTYSTTYDDAVPGSVTNTLENPGSLIKFT
7	SAM-T99	1x60A	0.266	0.218	1.999	threading_7	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LKKTSSSGLYKVQIGAFKVKANADSLASNAEAK-GFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNA-GFDAIVILES
8	HHPRED-l	3d30_A	0.120	0.508	1.767	threading_8	------------------------------------------------------------------------MAYDDLHEGYATYTGSGYSG--GAFL--LDSDMEITAINPADAGSYLEVEGP--KGKTTVYVTDLYPEGARGALDLSPNAFRKIGNMKDGKINIKWRVVKAPGNFTYRIKEGSS----RWWAAIQVRNHKY--------PVMKME---YEKD----GKWINMEKMNLGTGSLKVR--MTDI-------------R---GKVV-KDTIPKLPESGTSKAYTVPGHVFPE--------------------------------------------------------------
9	HHPRED-l	1uta_A	0.240	0.207	3.508	threading_9	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KDERRWMVQCGSFRGAEQAETVRAQLAFE-GFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIRLAA-
10	HHPRED-g	3d30_A	0.144	0.517	1.470	threading_10	------------------------------------------------------------------------MAYDDLHEGYATYTGSGYSG--GAFLLDPISDMEITAINPADLGSYLEVEGP--KGKTTVYVTDLYPEGARGALDLSPNAFRKIGNMKDGKINIKWRVVKAPITFSSRWWAAIQVRNHKY--------PVMKMEYE---KDGKWINMEKMDYNHF-------VSTNLGTGS--LKVRMTDIRGK--VV----------KDTIPKL-----PESGTSKAYTVPGHVFPE--------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.407 to 1b24A SCOP code=d.95.2.1	TM-score=0.409 to 1kdgB SCOP code=c.3.1.2	TM-score=0.405 to 1b24A SCOP code=d.95.2.1	TM-score=0.492 to 1w9sA SCOP code=b.18.1.10	TM-score=0.405 to 1b24A SCOP code=d.95.2.1