Template-based Modeling Results for RLMB_ECOLI

Submitted Primary Sequence

>Length 243
MSEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS
CCCEEEEHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHCCHHHCCCEEEECCHHHHHHHHHHCCCEEEEEECCCCCCHHHCCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS
433001001001100342332010000122233330120020034321201102330022213122220000202214323131012112323310000011021120000000002001020000033211321130010111002101001022013002102523010000013232202203130200000012242024202320201010111120100000000000011113344
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS
1	MUSTER	1gz0F	0.949	0.975	3.189	threading_1	GSSEIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLART--RLQEENIWIVGTAGEADHTLYQSK--TGRLALVGAEGEG-RRLTREHCDELISIPA-GSVSSLNVSVATGICLFEAVRQRS
2	SPARKS	3nk6a	0.218	0.942	5.528	threading_2	KTTLIEDTEPLMECIRAG-VQFIEVYGSSGTPLD--PALLDLCRQREIPVRLIDVSIVNQL-----FAKVFGIARVPRPARLADIAER-----GGDVVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIARRLLRASRGYVFSLPVVLA-DREEAVSFLRDNDIALMVLDTDGDLGVKDLDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLNVSVSVGIALHERSARNF
3	PROSPECT2	3gyqA	0.209	0.963	3.939	threading_3	ANTLIEDVEPLMHSI-AAGVEFIEVYGSDS--SPFPSELLDLCGRQNIPVRLIDSSIVNQLFKGERKAKTFGIARVPRPARFGDIAS-----RRGDVVVLDGVKIVGNIGAIVRTSLALGASGIILVDSDITSIDRRLQRASRGYVFSLPVVLS-GREEAIAFIRDSGMQLMTLKADGDISVKELDNPDRLALLFGSEKGGPSDLFEEASSASVSIPMMSQTESLNVSVSLGIALHERIDRNN
4	PPA-I	1gz0F	0.932	0.975	4.343	threading_4	SHSEIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLART--RLQEENIWIVGTAGEADHTLY--QSKTGRLALVGAEGEG-RRLTREHCDELISIPA-GSVSSLNVSVATGICLFEAVRQRS
5	HHPRED-l	1gz0_A	1.000	0.959	5.170	threading_5	-SE-IYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLART---LQEENIWIVGTAGEADHTLYQSK-TGRLALV-GAEGEG-RRLTREHCDELISIP-AGSVSSLNVSVATGICLFEAVRQR-
6	HHPRED-g	1gz0_A	1.000	0.963	4.740	threading_6	-SE-IYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLART---LQEENIWIVGTAGEADHTLYQSK-TGRLALV-GAEGEG-RRLTREHCDELISIP-AGSVSSLNVSVATGICLFEAVRQRS
7	SP3	3nk6a	0.218	0.942	5.563	threading_7	KTTLIEDTEPLMECIRAG-VQFIEVYGSSGTPLD--PALLDLCRQREIPVRLIDVSIVNQL-----FAKVFGIARVPRPARLADIAER-----GGDVVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIARRLLRASRGYVFSLPVVLA-DREEAVSFLRDNDIALMVLDTDGDLGVKDLDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLNVSVSVGIALHERSARNF
8	SAM-T99	1gz0F	0.949	0.975	6.809	threading_8	SHSEIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLART--RLQEENIWIVGTAGEAD-HTLYQSKTGRLALV-GAEGEG-RRLTREHCDELISIP-AGSVSSLNVSVATGICLFEAVRQRS
9	MUSTER	3gyqA	0.209	0.963	2.645	threading_9	ITTLIEDVEPLMHSIAAGVE-FIEVYGSD--SSPFPSELLDLCGRQNIPVRLIDSSIVNQLFKGERKAKTFGIARVPRPARFGDIASR-----RGDVVVLDGVKIVGNIGAIVRTSLALGASGIILVDSDITSIDRRLQRASRGYVFSLP-VVLSGREEAIAFIRDSGMQLMTLKADGDISVKELDNPDRLALLFGSEKGGPSDLFEEASSASVSIPMMSQTESLNVSVSLGIALHERIDRNL
10	SPARKS	1gz0a	0.953	0.967	4.749	threading_10	--SEIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLART--RLQEENIWIVGTAGEADHTLYQSKTGR--LALVGAEGEG-RRLTREHCDELISIPA-GSVSSLNVSVATGICLFEAVRQRS

Predicted Tertiary Structure


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TM-score=0.961 to 1gz0F TM-score=0.975 to native SCOP code=c.116.1.1	TM-score=0.960 to 1gz0F TM-score=0.974 to native SCOP code=c.116.1.1	TM-score=0.813 to 1gz0F TM-score=0.828 to native SCOP code=c.116.1.1	TM-score=0.767 to 1gz0F TM-score=0.817 to native SCOP code=c.116.1.1	TM-score=0.956 to 1gz0F TM-score=0.977 to native SCOP code=c.116.1.1

Experimental Structure

Download 1gz0A

SCOP code=c.116.1.1