Template-based Modeling Results for RIMO_ECOLI

Submitted Primary Sequence

>Length 441
MSKVTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEAIGEALNENGKVIVTGCLGAKEDQIREVHPKVLEITGPHSYEQVLEHVHHYVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKLGIWTRLHYVYPYPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAIGRSMADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSKVTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEAIGEALNENGKVIVTGCLGAKEDQIREVHPKVLEITGPHSYEQVLEHVHHYVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKLGIWTRLHYVYPYPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAIGRSMADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV
CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEECEEEECCCCCHHHHHHHHHHHHHHCCCEECCEECCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEC
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSKVTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEAIGEALNENGKVIVTGCLGAKEDQIREVHPKVLEITGPHSYEQVLEHVHHYVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKLGIWTRLHYVYPYPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAIGRSMADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV
554233422000000101311000210030034210100223430100000001013301320031003123331100000011231320132013000000021032002002311433332312212233213112411000200211223000000011213221221120021023015220210000011011201113332122323223110110021015021010000000121122002001223003101010220013004213130213101110310151013000100000001212331022002003402011000020032320302203330233013201330120022001221343112201000222343222121223113120000021323142010020101202321020122
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSKVTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEAIGEALNENGKVIVTGCLGAKEDQIREVHPKVLEITGPHSYEQVLEHVHHYVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKLGIWTRLHYVYPYPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAIGRSMADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV
1	MUSTER	2qgqA	0.358	0.601	2.283	threading_1	----------------------------------------------------------------------------------------------------------------------------------------EERPYAYVKISDGC-------------GSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQ----------ALPDLLRRLNSLNGEFWIRVLHPDHLTEEIISALELDKVVKYFDVPVQHGSDKILKLGRTKS--SEELKKLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDKVDPE------------AKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGK--GKIGDFLEVVIKEHDEYDWGSVI-
2	PROSPECT2	3gh4A	0.086	0.893	1.197	threading_2	HHHHSSGL------VPRGSHMA---------SMSQPSILPKTKNASIFVAGNNVGETDELFNIGQALAKKLNQPTAGSIYLTTVGGNAALGNETTSNQVTLTANKPEGVFRGNQTLLQLLPAGIEKNTVVSG----VQWVIPHSNISDKPEYEYRGLMLDVARHFF---TVDEVKRQIDLASQYKINKFHMHLSDDQGWRIEIKSIGSKGQVGGGPGGFKDIVSYAAERYIEVIPEIDMPGHTYGELNPDGKRKAMRAVGYSTLMPRAEITYQFV---------EDVISELAAISPSPYIHLGG-DESNATSAADYGRVTAIANSYGKKVVPSDTSSGATSDSNWTCSASTGTAAKAKGMKVIVSPANA---------------YLDMKYYSDSPIGLQWRGFVNTNRAYNWDPTDCIKGANIYGVESTLWTETFFADPIV
3	SPARKS	2qgqa	0.370	0.601	5.561	threading_3	----------------------------------------------------------------------------------------------------------------------------------------EERPYAYVKISDGC-------------GSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQA----------LPDLLRRLNSLNGEFWIRVLHPDHLTEEIISALELDKVVKYFDVPVQHGSDKILKLGRTKS--SEELKKLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDKVDPEA------------KRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRG--KGKIGDFLEVVIKEHDEY-DWGSVI
4	PROSPECT2	2qgqA	0.336	0.601	2.952	threading_4	E-----------------------------------------------------------------------------------------------------------------------------------------------------ERPYAYVKISDGCGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQ----------ALPDLLRRLNSLNGEFWIRVLHPDHLTEEIISALELDKVVKYFDVPVQHGSDKILKLGRTKSSEE--LKKLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDKVDPEA------------KRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGK--GKIGDFLEVVIKEHDEYDWGS-VI
5	PPA-I	2qgqA	0.358	0.601	10.078	threading_5	----------------------------------------------------------------------------------------------------------------------------------------EERPYAYVKISDGC-------------GSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRK----------QALPDLLRRLNSLNGEFWIRVLHPDHLTEEIISALELDKVVKYFDVPVQHGSDKILKLGRTKS--SEELKKLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDKVDPE------------AKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKG--KIGDFLEVVIKEHDEYDWGSVI-
6	HHPRED-l	2qgq_A	0.401	0.594	7.937	threading_6	----------------------------------------------------------------------------------------------------------------------------------------EERPYAYVKISDGC-------------GSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYR----------KQALPDLLRRLNSLNEWIRV-YLHPDHLTEEIISA-LELDVVKYFDVPVQHGSDKILKL-GRTKSSEELKK-LSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSD-----------KVDPE-AKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKG--KIGDFLEVVIKEHDEYD-WGSV-
7	HHPRED-g	2qgq_A	0.407	0.596	7.364	threading_7	----------------------------------------------------------------------------------------------------------------------------------------EERPYAYVKISDGC-------------GSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLY-------R---KQALPDLLRRLNSLGEWIRV-YLHPDHLTEEIISA-LEDKVVKYFDVPVQHGSDKILKL-GRTKSSEELKK-LSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSD-----------KVDPE-AKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKG--KIGDFLEVVIKEHDEYD-WGSVI
8	SP3	2qgqa	0.348	0.599	5.178	threading_8	---------------------------------------------------------------------------------------------------------------------------------------------------EE--RPYAYVKISDGCGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRK----------QALPDLLRRLNSLNGEFWIRV-YLHPLTEEIISALELDKVVKYFDVPVQHGSDKILKLGRTKS--SEELKKLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDKVDPEA------------KRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRG--KGKIGDFLEVVIKEHDEY-DWGSVI
9	SAM-T99	2qgqA	0.383	0.603	8.888	threading_9	----------------------------------------------------------------------------------------------------------------------------------------EERPYAYVKISDGC-------------GSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRR--------LNSLNGEFWIRV-YLHPDHLTEEIISALELDKVVKYFDVPVQHGSDKILKLGRTKSSEE--LKKLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYS-----------DKVDPE-AKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRG--KGKIGDFLEVVIKEHDEYD-WGSVI
10	MUSTER	2qgqA2	0.388	0.234	0.725	threading_10	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KYFDVPVQHGSDKILKLGRTKS--SEELKKLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDKVDPEAKRRQEELQAEISNSRLDR-------------------------------------------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.484 to 1oltA SCOP code=c.1.28.2	TM-score=0.732 to 1m04A SCOP code=c.1.8.6	TM-score=0.475 to 1oltA SCOP code=c.1.28.2	TM-score=0.472 to 1oltA SCOP code=c.1.28.2	TM-score=0.443 to 1sjaA SCOP code=c.1.11.2