Template-based Modeling Results for RIMK_ECOLI

Submitted Primary Sequence

>Length 300
MKIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEMLGSYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEGDFRSNLHRGGAASVASITPQEREIAIKAARTMALDVAGVDILRANRGPLVMEVNASPGLEGIEKTTGIDIAGKMIRWIERHATTEYCLKTGG
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEMLGSYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEGDFRSNLHRGGAASVASITPQEREIAIKAARTMALDVAGVDILRANRGPLVMEVNASPGLEGIEKTTGIDIAGKMIRWIERHATTEYCLKTGG
CEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEHHHEEEECCCCCCEEEECCEECCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEEECCEEEEEEEEECCCCCCEEEECCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEMLGSYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEGDFRSNLHRGGAASVASITPQEREIAIKAARTMALDVAGVDILRANRGPLVMEVNASPGLEGIEKTTGIDIAGKMIRWIERHATTEYCLKTGG
210000022221210210120034221201000021010202322120112123023000000111121111000002002212010011020012011101011002322130020000111310120022113110000003224120000022331022002002213220001100432432101000012100000111053130100013201011020133112001200420311000000011341100010110110210130121200020020012201222134335
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEMLGSYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEGDFRSNLHRGGAASVASITPQEREIAIKAARTMALDVAGVDILRANRGPLVMEVNASPGLEGIEKTTGIDIAGKMIRWIERHATTEYCLKTGG
1	MUSTER	1gsaA	0.198	0.943	2.431	threading_1	IKLGIVMINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEWFSFVGEQDLPLADLDVILMRKDPPFDIYATYILERAEEKGTLIVNKPQSLRDCNEKLFTAWFSD----LTPETLVTRNKAQLKAFWEKHS--DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTGTRYCMAQNYLPAIKDGDKRVLVVDGPVPYCLARIPQGGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKLIFVGLDIIG--DRLTEINVTSPTCIREIEAEFPVSITGMLMDAIEARLQ---------
2	SPARKS	1gsa_	0.201	0.943	5.087	threading_2	IKLGIVNINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEWFSFVGEQDLPLADLDVILMRKDPPFDIYATYILERAEEKGTLIVNKPQSLRDCNEKLFTAWFSDL----TPETLVTRNKAQLKAFWEKHS--DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHRYCMAQNYLPAIKDGDKRVLVVDGEPVYCLARIPQGGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKLIFVGLDII--GDRLTEINVTSPTCIREIEAEFPVSITGMLMDAIEARLQ---------
3	PROSPECT2	1gsa_	0.194	0.943	3.403	threading_3	IKLGIVMINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEWFSFVGEQDLPLADLDVILMRKDPPFDIYATYILERAEEKGTLIVNKPQSLRDCNEKLFTAWF----SDLTPETLVTRNKAQLKAFWEKHS--DIILKPLDGMGGASIFRVKEPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVYCLARIPQGGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLGLIFVGLDII--GDRLTEINVTSPTCIREIEAEFPVSITGMLMDAIEARLQ---------
4	PPA-I	1gsaA	0.198	0.943	3.271	threading_4	IKLGIVNINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEWFSFVGEQDLPLADLDVILMRKDPPFDIYATYILERAEEKGTLIVNKPQSLRDCNEKLFTAWFSD----LTPETLVTRNKAQLKAFWEKHS--DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGYCMAQNYLPAIKDGDKRVLVVDGPVPYCLARIPQGGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKLIFVGLDIIG--DRLTEINVTSPTCIREIEAEFPVSITGMLMDAIEARLQ---------
5	HHPRED-l	1uc8_A	0.289	0.807	2.266	threading_5	-MLAILYDRIRPD-ERMLFERAEALGLPYKKVYVPALPMVLGER-------PKELEGVTVALERCVSQS--RGLAAARYLTALGIPVVNRPEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRLMEAFG-YPVVLKPVIG--G------------------GGFQHQLFYIQEYVEK-PGRDIRVFVVGERAIAAIYR----------------AENCPLTEEVARLSVKAAEAVGGGVVAVDLFESERGLLVNEVNHTMEFKNSVHTTGVDIPGEILKYAWSLAS---------
6	HHPRED-g	2p0a_A	0.162	0.907	3.890	threading_6	PRILLVIDDAKYFHGKKVVEQAEFSELNLAAYVTGGCMVDMQ-----------RSFKPDFILVRQHAYSEDY-RSLVIGLQYGGLPAVNSLYSVYNFCSKSQLIKIFHSLGPKFPLVEQTFFPNHK-PM-VTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTYATTEAFID--SKYDIRIQKIGSNYK-AYMRTSISGNWKANTG-SAMLEQVAMTERYRLWVDSCSEMFGLDICAVKAVHSKDGDYIIEVMDSMPLIGEHVEERQLMADLVVSKMSQLP----------
7	SP3	1gsa_	0.201	0.943	5.389	threading_7	IKLGIVNINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEWFSFVGEQDLPLADLDVILMRKDPPFDIYATYILERAEEKGTLIVNKPQSLRDCNEKLFTAWFS----DLTPETLVTRNKAQLKAFWEKHS--DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHRYCMAQNYLPAIKDGDKRVLVVDGEPVYCLARIPQGGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKLIFVGLDIIGDR--LTEINVTSPTCIREIEAEFPVSITGMLMDAIEARLQ---------
8	SAM-T99	1gsaA	0.204	0.933	4.576	threading_8	MKLGIVM-DPKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYILERAGTLIVNKPQSLRDCNEKLFTAWFSDL----TPETLVTRNKAQLKAFWEKHS--DIILKPLDGMGGASIFRVKGDPNLGVIAETLTEHGRYCMAQNYLPAIKDGDKRVLVVDGEPVYCLARIPQGGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLGLIFVGLDII----GDRLTEINSPTCIREIEAEFPVSITGMLMDAIEARLQ---------
9	MUSTER	1uc9A	0.285	0.853	2.226	threading_9	M-LAILYDRIR-PDERMLFERAEALGLPYKKVYVPALPMVLGE-------RPKELEGVTVALERCV--SQSRGLAAARYLTALGIPVVNRPEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRLMEAFG-YPVVLKPVIGGGGGGGGGGGGGGGGGGF------QHQLFYIQEYV-EKPGRDIRVFVVGERAIAAIYR----------------AENCPLTEEVARLSVKAAEAVGGGVVAVDLFESERGLLVNEVNHTMEFKNSVHTTGVDIPGEILKYAWSLAS---------
10	SPARKS	1gsa_2	0.215	0.620	3.329	threading_10	-------------------------------------------------------------------------------------------------NEKLFTAWFSDL----TPETLVTRNKAQLKAFWEKHS--DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGYCMAQNYLPAIKDGDKRVLVVDGEPVYCLARIPQGGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKLIFVGLDII--GDRLTEINVTSPTCIREIEAEFPVSITGMLMDAIEARLQ---------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.903 to 1gsaA SCOP code=c.30.1.3	TM-score=0.903 to 1gsaA SCOP code=c.30.1.3	TM-score=0.902 to 1gsaA SCOP code=c.30.1.3	TM-score=0.902 to 1gsaA SCOP code=c.30.1.3	TM-score=0.903 to 1gsaA SCOP code=c.30.1.3