Template-based Modeling Results for RIBD_ECOLI

Submitted Primary Sequence

>Length 367
MQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHLVGA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHLVGA
CCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHCCHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCHHHCCCCCEEEEECCCHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCHHEEEEEECCCEECCCCCCCCCCCCCCCHHHCCCCEEEEEEEECCEEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHLVGA
4512200110020022022221210100000022010001000332123001010022023303300000001201221711100110131122100000201323101300110230101011010121011002000221322111000000011213111221313211122022002101220200001010012211101121231331022113333242100000113230132031023312000011232232133202000022332311021002200523020000200120000003210100000000020012303110212103312201302111022004100020013
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHLVGA
1	MUSTER	2d5nD	0.416	0.962	3.201	threading_1	SMEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNVT------------KQPVRVILDTVLSIPEDAKVICDQAPTWIFTTARADEEKKKGVNIFTL--ETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLTAKPT
2	SPARKS	2b3za	0.415	0.965	6.608	threading_2	-MEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNVT------------KQPVRVILDTVLSIPEDAKVIDQIAPTWIFTTARADEEKKKAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLTAKPT
3	PROSPECT2	2b3zA	0.418	0.965	5.678	threading_3	M-EEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNV------------TKQPVRVILDTVLSIPEDAKVIDQIAPTWIFTTARADEEKKKAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGTAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLTAKPT
4	PPA-I	2d5nD	0.411	0.967	4.750	threading_4	SMEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNV------------TKQPVRVILDTVLSIPEDAKVICDQAPTWIFTTARADEEKKKAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLTAKPT
5	HHPRED-l	2g6v_A	0.997	0.926	6.639	threading_5	GQDEYY-ARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALR-AGEKAKGATAYVTLEPC-------PCCDALIAAGVARVVAS-QDPNPQVAGRGLYRLQQAGIDVSHGL--SEAEQLNKGFLKR-RTGFPYIQLKLGASLDGRTA----ESQWITSPQARRDVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVL--QLGKQQINSIWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-------PQFKFKEIRHVGPDVCLHLVG-
6	HHPRED-g	2g6v_A	0.997	0.929	6.131	threading_6	GQDEYY-ARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALR-AGEKAKGATAYVTLEPC-------PCCDALIAAGVARVVAS-QDPNPQVAGRGLYRLQQAGIDVSHGL--SEAEQLNKGFLKR-RTGFPYIQLKLGASLDGRTA----ESQWITSPQARRDVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVL--QLGKQQINSIWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-------PQFKFKEIRHVGPDVCLHLVGA
7	SP3	2b3za	0.418	0.965	6.299	threading_7	M-EEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNVT------------KQPVRVILDTVLSIPEDAKVIDQIAPTWIFTTARADEEKKKAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGTAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLTAKPT
8	SAM-T99	2d5nD	0.416	0.962	6.715	threading_8	SMEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNV------------TKQPVRVILDTVLSIPEDAKVICDQIPTWIFTTEKKKRLSAFGVNIFTLETE--RIQIPDVLKILAEEGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLTAKPT
9	MUSTER	2g6vB	0.969	0.954	3.010	threading_9	QGQDEYYARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRA-GEKAKGATAYVTLEPCS---------DALIAAGVARVVAS-QDPNPQVAGRGLYRLQQAGIDVSHGL--SEAEQLNKGFLKRR-TGFPYIQLKLGASLDGRTA-ASGESQWITSPQARRDVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDL--VVLQLGKQQINSIWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHLVGA
10	SPARKS	2g6va	0.965	0.932	5.779	threading_10	QGQDEYYARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALR-AGEKAKGATAYVTLEPC-------PCCDALIAAGVARVVASQ-DPNPQVAGRGLYRLQQAGIDVSHGLS--EAEQLNKGFLK-RRTGFPYIQLKLGASLDGRTA----ESQWITSPQARRDVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDL--VVLQLGKQQINSIWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-------PQFKFKEIRHVGPDVCLHLVGA

Predicted Tertiary Structure


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TM-score=0.968 to 2d5nD TM-score=0.857 to native SCOP code=c.71.1.2	TM-score=0.973 to 2d5nD TM-score=0.865 to native SCOP code=c.71.1.2	TM-score=0.962 to 2d5nD TM-score=0.877 to native SCOP code=c.71.1.2	TM-score=0.959 to 2d5nD TM-score=0.876 to native SCOP code=c.71.1.2	TM-score=0.972 to 2d5nD TM-score=0.868 to native SCOP code=c.71.1.2

Experimental Structure

Download 2g6vB

SCOP code=c.71.1.2