Template-based Modeling Results for RHTA_ECOLI

Submitted Primary Sequence

>Length 295
MPGSLRKMPVWLPIVILLVAMASIQGGASLAKSLFPLVGAPGVTALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFVWVVLAVLGLWFLLPLGQDVSHVDLTGCALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSVIPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTPIQLLALGAIIAASMGSTLTVRKESKIKELDIN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MPGSLRKMPVWLPIVILLVAMASIQGGASLAKSLFPLVGAPGVTALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFVWVVLAVLGLWFLLPLGQDVSHVDLTGCALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSVIPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTPIQLLALGAIIAASMGSTLTVRKESKIKELDIN
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MPGSLRKMPVWLPIVILLVAMASIQGGASLAKSLFPLVGAPGVTALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFVWVVLAVLGLWFLLPLGQDVSHVDLTGCALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSVIPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTPIQLLALGAIIAASMGSTLTVRKESKIKELDIN
5533244221000000000000001000000110012001000000000000000000021222312231010000000000000000010022011000000200000000000132001000000000000000221331221010000000000000000000022013231110000000000000000001211321121200000000000010000001000013022200000000100000000000012211011000000000000001012333232442335
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MPGSLRKMPVWLPIVILLVAMASIQGGASLAKSLFPLVGAPGVTALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFVWVVLAVLGLWFLLPLGQDVSHVDLTGCALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSVIPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTPIQLLALGAIIAASMGSTLTVRKESKIKELDIN
1	MUSTER	3zuxA	0.120	0.902	1.008	threading_1	APDTFKWAG---PYIPWLLGIIMFGMGLTLFDILFKH-VVIIGVIAQFAIMPATAWCLSKLL--NLPAEIAVGVILVGCTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEM--LEIQAAGMLM------------SIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGNSGLAAALAAAHFAVVAVPGALFSVWHNISGSLLATYWAAKA---------
2	SPARKS	2x1gf	0.052	0.986	1.447	threading_2	IVRFAGGPKIVLNRLCISLGAYIVHMLGEEVINTFQNQRSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHKCYWPCIHGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADP----ELSILVHRIVQEILHCTDKPGIYPVESCSTMALAFWYMLQDEVFAEQPDEKSLAKWS
3	PROSPECT2	3kb9A	0.083	0.936	1.550	threading_3	AVPPRQLHPYWPKL-------------QETTRTWLLEKRLMPADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLLLHTALDSPGDHLHHEDTLVAGFADSVRRL------YAFLPATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELWIWTDLLEPSSGCELPDAVRKHPAYRRAALLSQEFAAWYNDLCSLAIGEVRRRVEECITEFLAVERDALRFALADGTVRGKELSNMRNWFSSVYWFHHESWDDRSTPPYVNN
4	PPA-I	3zuxA	0.113	0.929	1.228	threading_4	DTFKWAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLL--NLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLM----------SIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGNSGLAAALAAAHFAAAPVPGALFSVWHNISGSLLATYWAAKA---------
5	HHPRED-l	3b5d_A	0.152	0.336	3.494	threading_5	-------------------------------------------------------------------------------------------------------------------------------------------------------YLGGAILAEVIGTTLMKFSEG--------------------------FT-----RL--WPSVGTIICYCASFWLLAQTLAYIPTGIAYAISGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS------------
6	HHPRED-g	3b5d_A	0.167	0.325	3.673	threading_6	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YLGGAILAEVIGTKFSE--GFT-RL--WPSVGTIICYCASFWLLAQTLAYIPTGIAYAISGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS------------
7	SP3	3l1la	0.110	0.990	0.700	threading_7	DPSPRRCFGPFLGYQTNVLYWLACWINIAMVVIGVGYLSILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWAAIQSTLNVTLSFIGVESASVAAGVVLIAAVCYVLSTTAIMGMIPNAALRVSGDTAGAIVSFCAAAGLGGWTLLAGQTAKVNKAGTPVAGLIIVGILMTIFQLSSISPNATKE--FGLVSSVSVIFTLVPYLYTCAALLLLHFGKARPAYLAVTTIAFLYCIWAV-VGSGAKEVMWSFVTLMVITAMYALNYNRLHKNPYPLD
8	SAM-T99	3pxvA	0.198	0.275	0.569	threading_8	---------------------------------------------GRLFYGAPCIVVPIDPTQY-------------GPAVDCGILCQTIALAATSLGIANICGYTGLAFASGLRSKRPEGYAFGCSVLLGHANTTKPP------------------------------------------------------------------------------------------------------------------------------------------------------------
9	MUSTER	3kb9A	0.069	0.983	0.842	threading_9	VPPSLRLPVIEAAFPRQL----YWPKLQETTRTWLLEKRLMPADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHTALDSPGDHLHHEDTLVAGFADSVRRLYAFLPATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELVRKHPAYRRAALLSQEFAAWYNDLCSLPKEILT-LEEAIGEVRRRVEECITEFLAVERDALRANVGNMRNWFSSVYWFHHESGRDDRSTPPYVN
10	SPARKS	1pw4a	0.119	0.993	1.231	threading_10	VPWATSSIAVMFVLLFLCGWFQGM--GWPPCGRTMVHWWIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMSCGLPPIEEYKNDTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASDFFGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE

Predicted Tertiary Structure


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TM-score=0.439 to 1pv6A SCOP code=f.38.1.2	TM-score=0.427 to 1pv6A SCOP code=f.38.1.2	TM-score=0.655 to 1u6gC SCOP code=a.118.1.2	TM-score=0.753 to 1hm7B SCOP code=a.128.1.4	TM-score=0.426 to 1pw4A SCOP code=f.38.1.1