Template-based Modeling Results for RHO_ECOLI

Submitted Primary Sequence

>Length 419
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS
CCHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECHHHHHHCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS
45232134231320120024021331241313100100022223122200020001004200100211211101134101001200230213201101020112433341100010010223313213331213310111132313132232223300010010001003111000001141010000000020023223100000000132133013104312010000122221221010020002102101424210000000001001001210112120122101020021022011002313320000000000022214221100220210030100000201242100001023101232310023311210210130022113220011002211213213300220344
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS
1	MUSTER	3l0oA	0.550	0.976	4.114	threading_1	ISISELESMNIKQLYEIAKSLGIPRYTSMRKRDLIFAILKAQTESTGYFFGEGVLEIHPEGFGFLRRIEDNLLPSNDDIYISPSQIRKFNLNTGDIISGVIRKPKEGEKYFAMIKIEAINYRPVD----RVNFDNLTPDYPRERFILET---DPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLARVYNIVVPPSGKLLTGGVDPAALYKPKRFFGAARNTREGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAINLLLSGTRREELLLDEETLKKVWLLRRMLSAMTEEEGLTLILNKLSETSSNEEFLKLI---
2	SPARKS	1pv4a	0.962	0.936	8.454	threading_2	-NLTELKNTPVSELITLGEN-GLENLAR-RKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPE--NNKILFENLTPLHANSRLRGS-----TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTL-LQNIAQSIAYNHPDC-VLVLLIDERPEEVTEQR-LVKGEVVASTFDEPASRHVQVAE-VIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA---VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGS-KDEVIYEEFKGTGN-ELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQK-WILRKIIHPGE--IDAEFLINKLA-TKTNDDFFEK----
3	PROSPECT2	3l0oA	0.550	0.976	6.550	threading_3	ISISELESMNIKQLYEIAKSLGIPRYTSMRKRDLIFAILKAQTESTGYFFGEGVLEIHPEGFGFLRRIEDNLLPSNDDIYISPSQIRKFNLNTGDIISGVIRKPKEGEKYFAMIKIEAINYRPV----DRVNFDNLTPDYPRERFILET---DPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLARVYNIVVPPSGKLLTGGVDPAALYKPKRFFGAARNTREGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAINLLLSGTRREELLLDEETLKKVWLLRRMLSAMTEEEGLTLILNKLSETSSNEEFLKLI---
4	PPA-I	3l0oA	0.550	0.976	9.911	threading_4	ISISELESMNIKQLYEIAKSLGIPRYTSMRKRDLIFAILKAQTESTGYFFGEGVLEIHPEGFGFLRRIEDNLLPSNDDIYISPSQIRKFNLNTGDIISGVIRKPKEGEKYFAMIKIEAINYRPV----DRVNFDNLTPDYPRERFILET---DPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLARVYNIVVPPSGKLLTGGVDPAALYKPKRFFGAARNTREGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAINLLLSGTRREELLLDEETLKKVWLLRRMLSAMTEEEGLTLILNKLSETSSNEEFLKLI---
5	HHPRED-l	3ice_A	1.000	0.919	5.060	threading_5	-NLTELKNTPVS-----------------RKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLR-ERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKT-LLQNIAQSIAYNHPDCVL-VLLIDERPEEVTE-QRLVKGEVVASTFDEPASRHVQVAE-VIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSK-DEVIYEEFKGTGN-ELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQK-WILRKIIHP-GEIDA-EFLINKLA-TKTNDDFFE-----
6	HHPRED-g	3ice_A	1.000	0.919	7.273	threading_6	-NLTELKNTPVS-----------------RKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLR-ERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKT-LLQNIAQSIAYNHPDCVL-VLLIDERPEEVTE-QRLVKGEVVASTFDEPASRHVQVAE-VIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSK-DEVIYEEFKGTGN-ELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQK-WILRKIIHP-GEIDA-EFLINKLA-TKTNDDFFE-----
7	SP3	1pv4a	0.952	0.936	8.263	threading_7	-NLTELKNTPVSELITLGE-NGLENLA-RRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPE--NNKILFENLTPLHANSRLRGST-----EDLTARVLDLASPIGRGQRGLIVAPPKAGKTL-LQNIAQSIAYNHPDC-VLVLLIDERPEEVTEQR-LVKGEVVASTFDEPASRHVQVAE-VIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA---VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGS-KDEVIYEEFKGTGN-ELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQK-WILRKIIHPGE--IDAEFLINKL-ATKTNDDFFEK----
8	SAM-T99	3l0oA	0.550	0.976	7.611	threading_8	ISISELESMNIKQLYEIAKSLGIPRYTSMRKRDLIFAILKAQTESTGYFFGEGVLEIHPEGFGFLRRIEDNLLPSNDDIYISPSQIRKFNLNTGDIISGVIRKPKEGEKYFAMIKIEAINYRPVD----RVNFDNLTPDYPRERFILETDP---KIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLARVYNIVVPPSGKLLTGGVDPAALYKPKRFFGAARNTREGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAINLLLSGTRREELLLDEETLKKVWLLRRMLSAMTEEEGLTLILNKLSETSSNEEFLKLI---
9	MUSTER	3iceC	0.922	0.952	3.383	threading_9	-NLTELKNTPVSELITLGENLE---NLARRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRER-GNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKT-LLQNIAQSIAYNHPDC-VLVLLIDERPEEVTEQ-RLVKGEVVASTFDEP-ASRHVQVAEVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGS-KDEVIYEEFKGTGN-ELHLSRKIAEKRVFPAIDYNRSGTRKEELLTT-QEELQKWILRKIIHPGE--IDAEFLINKLA-TKTNDDFFE-----
10	SPARKS	1a62_	1.000	0.291	3.109	threading_10	-NLTELKNTPVSELITLGEN-GLENLAR-RKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.671 to 1kmhA TM-score=0.848 to native SCOP code=a.69.1.1	TM-score=0.671 to 1kmhA TM-score=0.848 to native SCOP code=a.69.1.1	TM-score=0.661 to 1kmhA TM-score=0.980 to native SCOP code=a.69.1.1	TM-score=0.671 to 1kmhA TM-score=0.858 to native SCOP code=a.69.1.1	TM-score=0.671 to 1kmhA TM-score=0.858 to native SCOP code=a.69.1.1

Experimental Structure

Download 1pvoA

SCOP code=a.69.1.1