Template-based Modeling Results for RFFA_ECOLI

Submitted Primary Sequence

>Length 376
MIPFNAPPVVGTELDYMQSAMGSGKLCGDGGFTRRCQQWLEQRFGSAKVLLTPSCTASLEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRPDTMNIDETLIEAAITDKTRVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYTAGGEGGATLINDKALIERAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLALWQNYYDALAPLAKAGRIELPSIPDGCVQNAHMFYIKLRDIDDRSALINFLKEAEIMAVFHYIPLHGCPAGEHFGEFHGEDRYTTKESERLLRLPLFYNLSPVNQRTVIATLLNYFS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIPFNAPPVVGTELDYMQSAMGSGKLCGDGGFTRRCQQWLEQRFGSAKVLLTPSCTASLEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRPDTMNIDETLIEAAITDKTRVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYTAGGEGGATLINDKALIERAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLALWQNYYDALAPLAKAGRIELPSIPDGCVQNAHMFYIKLRDIDDRSALINFLKEAEIMAVFHYIPLHGCPAGEHFGEFHGEDRYTTKESERLLRLPLFYNLSPVNQRTVIATLLNYFS
CCCCCCCCCCHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCEECCEECCCCCCEEEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHCCCCCEECCCCCCCCHHHHHCCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MIPFNAPPVVGTELDYMQSAMGSGKLCGDGGFTRRCQQWLEQRFGSAKVLLTPSCTASLEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRPDTMNIDETLIEAAITDKTRVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYTAGGEGGATLINDKALIERAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLALWQNYYDALAPLAKAGRIELPSIPDGCVQNAHMFYIKLRDIDDRSALINFLKEAEIMAVFHYIPLHGCPAGEHFGEFHGEDRYTTKESERLLRLPLFYNLSPVNQRTVIATLLNYFS
5122121212221021021002112001202103200210142020110000010000000001104043101000000000000100011101000000332102001210131013301000000001000102000100441401001000200202021220010010000001202111010200000011320021021023212331321223233010110001000110000000010310331031011003001300230242220201312321210000000104323212100300351502000000001102003211224130310120042001000023022210310020013115
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MIPFNAPPVVGTELDYMQSAMGSGKLCGDGGFTRRCQQWLEQRFGSAKVLLTPSCTASLEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRPDTMNIDETLIEAAITDKTRVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYTAGGEGGATLINDKALIERAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLALWQNYYDALAPLAKAGRIELPSIPDGCVQNAHMFYIKLRDIDDRSALINFLKEAEIMAVFHYIPLHGCPAGEHFGEFHGEDRYTTKESERLLRLPLFYNLSPVNQRTVIATLLNYFS
1	MUSTER	3dr4C	0.313	0.968	3.565	threading_1	LISVAAPRLDGNERDYVLECMDTTWISSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIMPVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAIITT-GEGGMITTNDDDLAAKMRLLRGQGMDPN-------RRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGN--RVTKPHVALTGRHVFWMYTVRLGESTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLAT--DDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVLV
2	SPARKS	3nu7a	0.292	0.939	4.499	threading_2	FIDLKNARIKDKIDAGIQRVLRHGQYI-LGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPRTKAIIPVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTSFFPSKPLGCYGDGGAIFTNDDELATAIRQIARHGQDR---------RYHHIRVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAEYDLSLKQVG----IGTPFIEVNNISVYAQYTVRMD---NRESVQASLKAAGVPTAVHYIPLNKQPAV---ADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTN---
3	PROSPECT2	3bn1A	0.309	0.965	5.195	threading_3	LISVAAPRLDGNERDYVLECMDTTWISSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIMPVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNI--ITTGEGGMITTNDDDLAAKMRLLRGQGMDPN-------RRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNR--VTKPHVALTGRHVFWMYTVRLGESTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLA--TDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVLV
4	PPA-I	3dr4C	0.313	0.968	5.609	threading_4	RISVAAPRLDGNERDYVLECMDTTWISSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIMPVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAIITT-GEGGMITTNDDDLAAKMRLLRGQGMDPN-------RRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLG--NRVTKPHVALTGRHVFWMYTVRLGESTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLAT--DDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVLV
5	HHPRED-l	1mdo_A	0.331	0.931	2.514	threading_5	FLPFSRPA-GAEELAAVKTVLDSGWIT-TGPKNQELEAAFCRLTGNQYAVAVSSATAG-HIAL-ALGIGEGDEVITPS-TWVSTLN-IVLLGANPV-VDVDRDTL-VTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARG-TAIFSFHAIKNITC-AEGGIVVTDNPQFADKLRSLKFHGLGVD--------QAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQA-ADLPFQPLSLP---SWEHIHAWHLFIIRVDEGITRDAL-ASLKTKGIGTGLHFRAAHTQKYYRER-FPTLTLPDTEWNSERICSLPLFPD-TESDFDRVITALHQIA-
6	HHPRED-g	2fnu_A	0.234	0.968	3.140	threading_6	EFAYSEPCLDKEDKKAVLEVLNSKQLT-QGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADEIITTPISFVATANMLLESGYTPVFAGIKNDG-NIDELALEKLINERTKAIVSVDYAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITT-AEGGAVVTNDSELHEKMKLFRSHGMLKK-----DFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPY---FTPLHPLLKDKSSNHLYPILMHQFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQL-FNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFE
7	SP3	3nu7a	0.292	0.939	4.752	threading_7	FIDLKNARIKDKIDAGIQRVLRHGQYI-LGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPRTKAIIPVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTSFFPSKPLGCYGDGGAIFTNDDELATAIRQIARHGQDR---------RYHHIRVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAEYDLSLKQVG----IGTPFIEVNNISVYAQYTVRMD---NRESVQASLKAAGVPTAVHYIPLNKQPAV---ADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTN---
8	SAM-T99	3dr4C	0.313	0.968	4.729	threading_8	RISVAAPRLDGNERDYVLECMDTTWISSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIMPVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAIITT-GEGGMITTNDDDLAAKMRLLRGQGMDPNR-------RYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLG--NRVTKPHVALTGRHVFWMYTVRLGESTTRDQVIKDLDALGIESRPVFHPMHIMPPYAH--LATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVLV
9	MUSTER	2ogaA	0.297	0.957	3.474	threading_9	RVPFAYEELRAETDAAIARVLDSGRYL-LGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALLPVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQ---------KYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPG---IGLPVTAPDTDPVWHLFTVRTE---RRDELRSHLDARGIDTLTHYVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAE
10	SPARKS	3uwca	0.258	0.939	4.177	threading_10	RVPYSYLERQEPYLNDLREFIKTADFT-LGAELEKFEKRFAALHNAPHAIGVGTGTDAL--ASFKLNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSEN-GYVIDPEKIEAAITDKTK-AIPVHYTGNIAD-PALAKIAKKHNLHIVEDACQTILGRINDKFVGSWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLIN---------RDVCVEYGINCR--DTIQAVIANRLNQLETITEKRRGIAHLYDQSFVDLS--EFIDVPVRREGVYHVFHIYVLRVK---YRDQLFQYLKDNGIEVKIHYPIAHLQPAAKSLGYQQGDFP-AEKHGEAVITLPAHPYLTEEEINYIIKKVREFYL

Predicted Tertiary Structure


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TM-score=0.929 to 2fniA SCOP code=c.67.1.4	TM-score=0.928 to 2fniA SCOP code=c.67.1.4	TM-score=0.907 to 2fniA SCOP code=c.67.1.4	TM-score=0.925 to 2fniA SCOP code=c.67.1.4	TM-score=0.929 to 2fniA SCOP code=c.67.1.4