Template-based Modeling Results for RFAY_ECOLI

Submitted Primary Sequence

>Length 232
MIQKSKIKDLVVFTDENNSKYLNVLNDFLSYNINIIKVFRSIDDTKVMLIDTDYGKLILKVFSPKVKRNERFFKSLLKGDYYERLFEQTQKVRNEGLNTLNDFYLLAERKTLRFVHTYIMIIEYIDGIELCDMPDIDDALKNKIQQSINALHQHGMVSGDPHRGNFIIKNGEVRIIDLSGKRASAQRKAKDRIDLERHYGIKNEIRDLGYYLLVYRKKMRNFMRRLKGKPAR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIQKSKIKDLVVFTDENNSKYLNVLNDFLSYNINIIKVFRSIDDTKVMLIDTDYGKLILKVFSPKVKRNERFFKSLLKGDYYERLFEQTQKVRNEGLNTLNDFYLLAERKTLRFVHTYIMIIEYIDGIELCDMPDIDDALKNKIQQSINALHQHGMVSGDPHRGNFIIKNGEVRIIDLSGKRASAQRKAKDRIDLERHYGIKNEIRDLGYYLLVYRKKMRNFMRRLKGKPAR
CCCEEEECCEEEEEECCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MIQKSKIKDLVVFTDENNSKYLNVLNDFLSYNINIIKVFRSIDDTKVMLIDTDYGKLILKVFSPKVKRNERFFKSLLKGDYYERLFEQTQKVRNEGLNTLNDFYLLAERKTLRFVHTYIMIIEYIDGIELCDMPDIDDALKNKIQQSINALHQHGMVSGDPHRGNFIIKNGEVRIIDLSGKRASAQRKAKDRIDLERHYGIKNEIRDLGYYLLVYRKKMRNFMRRLKGKPAR
5432121241100022322201200220133211102003314312000010221200021212213211200211131321120021022023221301220100022212311210000010032231221220132013201200210041000001023100002211010000213312212201100001322213222310000000012102200431333334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MIQKSKIKDLVVFTDENNSKYLNVLNDFLSYNINIIKVFRSIDDTKVMLIDTDYGKLILKVFSPKVKRNERFFKSLLKGDYYERLFEQTQKVRNEGLNTLNDFYLLAERKTLRFVHTYIMIIEYIDGIELCDMPDIDDALKNKIQQSINALHQHGMVSGDPHRGNFIIKNGEVRIIDLSGKRASAQRKAKDRIDLERHYGIKNEIRDLGYYLLVYRKKMRNFMRRLKGKPAR
1	MUSTER	3en9A2	0.189	0.776	1.488	threading_1	------------------------------------------AEADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKS-RTAREARYLALVKDFGIPAPYIFDVDLDN--------KRIMMSYINGKLAKDVIEDNLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFD-KDLYIIDFGLISNLDEDKAVDLIVFKKAVEKFDEIWERFLEGYKSVDRWEIILELMKDVERR
2	SPARKS	2vwba	0.158	0.957	2.075	threading_2	RWMSLDETKIIPNYRTDMVEVNWIKEIKGKKRKIPEHLIGKGAEADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKS-RTAREARYLALVKDFGIPAPYIFDVDLD--------NKRIMMSYINGKLAKDVIEDNLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIF-DKDLYIIDFGLISNLDEDKAVDLIVFKKAVSTHHEKFDEIWERFLEGYKWEIILELMKDVERR
3	PROSPECT2	3i0oA	0.148	0.875	1.322	threading_3	Q-------------PIQAQQLIELLKVHYGIDIHTAQFIQGGADAFAYQADSESKSYFIK---------------LKYGYHDEINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKFKIIAYPFIHAPNGFT-QNLTGKQWKQLGKVLRQIHETSLCHSDIHAGNVLVGNEEIYIIDGGGVGNVWNKPHEIQYFYEGYGEINVDKTILSYYRHERIVEDLESFKYFKEMFDP
4	PPA-I	3en9A2	0.178	0.776	3.204	threading_4	------------------------------------------AEADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKS-RTAREARYLALVKDFGIPAPYIFDVDL--------DNKRIMMSYINGKLAKDVIEDNLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDKD-LYIIDFGLISNLDEDKAVDLIVFKKAVLSTHHEKRFLEGYKSVYDRWEIILELMKDVERR
5	HHPRED-l	2acx_A	0.148	0.931	1.321	threading_5	RLEQGPCKDLAPFADYLDSIYFNLRQPVTKNTFRQYRVLGKGGFGEVCACQVRGKMYACKKLEKKRIKKRKGE------AMALNEK--------QILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDHGHIRISDLGLAVHTVGYMAPEVVK-NERYTFSPDWWALGYEMIAGQSPFQQRKEEVELVKE-
6	HHPRED-g	3pvu_A	0.136	0.853	1.699	threading_6	EILRGDVFQKFIESDKFTIGRGGFGEVYGTGKMYAMKCLDK-----------------------------KRIKMKQGETLALNERIMLSLVSTG-----DCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGFYAAEIILGLEHMHNRFVVYRDLKPANILLDHGHVRISDLGLACDFSKKKPHASMEVLQAYDSSADWFSLGCMLFKLLGHFLDVNRRLGCLGRG
7	SP3	2vwba	0.167	0.957	1.951	threading_7	MIRWMSLDETKIIPNYRTDMVEVNWEIKGKKRKIPEHLIGKGAEADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKS-RTAREARYLALVKDFGIPAPYIFDVDLD--------NKRIMMSYINGKLAKDVIEDNLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIF-DKDLYIIDFGLISNLDEDKAVDLIVFKKAVSTHHEKFDEIWERFLEGYKWEIILELMKDVERR
8	SAM-T99	3f69B	0.198	0.806	1.445	threading_8	-------------------------------RYELGEILGFGGMSEVHLARDDHRDVAVKVLRADLARDPSFYLR------FRREAQNAAAL--------NHPAIVAVYDTGEAETPAYIVMEYVDGVTLRDIPKRAIEVIADACQALNFSHQNGIIHRDVKPANILIATNAVKVVDFGIARAIADIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPV
9	MUSTER	1zaoA	0.170	0.862	1.144	threading_9	VVQNRQ-KDYEGSTFTFIGLSLYSLHRLVRSGDAIGKLMGEGKESAVFNCYSKFGECVVKFHKVGHTKVKEFSVLAIR--SARNEFRALQKLQGLAV-----PKVYAWEGN-------AVLMELIDAKELYRVRENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEEGIWIIDFPQSVELERDVRNIITYFSRTYRTEKD--------------INSAIDRILQE---
10	SPARKS	3en9a	0.180	0.957	1.896	threading_10	MLKAMEGQNVDFYVPPKEWLGLLMHKNGRWMSLDETKIIPNIAEADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKS-RTAREARYLALVKDFGIPAPYIFDVDLD--------NKRIMMSYINGKLAKDVIEDNLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIF-DKDLYIIDFGLGKISDEDKAVDLIVFKKAVSTHHEKDEIWERFLEGYKSWEIILELMKDVERR

Predicted Tertiary Structure


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TM-score=0.549 to 1nd4A SCOP code=d.144.1.6	TM-score=0.549 to 1nd4A SCOP code=d.144.1.6	TM-score=0.565 to 1nd4A SCOP code=d.144.1.6	TM-score=0.567 to 1zylA SCOP code=d.144.1.6	TM-score=0.555 to 1nd4A SCOP code=d.144.1.6