Template-based Modeling Results for RFAS_ECOLI

Submitted Primary Sequence

>Length 311
MTIYFINWVADYELKMIQYLKKKYKIKNITTPKKYNWINKKISKIGMDNAWLGRLFIKHYLNDIKKDDIIIINDSVVNKGINKQILKNINCHKVLLLRNTVGEDFILDNANYFDIIYDFEHRFIGNEKIKAIEQFFPIGMDEIRNYSLSDKNNSQPICFFLGRDKGRLQIINELAERLTTLGCKLDFNVVKDKTSSTTSKYLIEKQISYEENIRRTLNANIIVDITKENQSGWTLRILEALFFNKKLITNNINVFGSEIYSESRFFIIGHDDWDKLEYFINSSVKPMDYDSLYKFSPDKMMSTIVSDFIDK
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTIYFINWVADYELKMIQYLKKKYKIKNITTPKKYNWINKKISKIGMDNAWLGRLFIKHYLNDIKKDDIIIINDSVVNKGINKQILKNINCHKVLLLRNTVGEDFILDNANYFDIIYDFEHRFIGNEKIKAIEQFFPIGMDEIRNYSLSDKNNSQPICFFLGRDKGRLQIINELAERLTTLGCKLDFNVVKDKTSSTTSKYLIEKQISYEENIRRTLNANIIVDITKENQSGWTLRILEALFFNKKLITNNINVFGSEIYSESRFFIIGHDDWDKLEYFINSSVKPMDYDSLYKFSPDKMMSTIVSDFIDK
CEEEEEEEEECHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHCCEEEEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHCCEEEECCHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHCCC
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTIYFINWVADYELKMIQYLKKKYKIKNITTPKKYNWINKKISKIGMDNAWLGRLFIKHYLNDIKKDDIIIINDSVVNKGINKQILKNINCHKVLLLRNTVGEDFILDNANYFDIIYDFEHRFIGNEKIKAIEQFFPIGMDEIRNYSLSDKNNSQPICFFLGRDKGRLQIINELAERLTTLGCKLDFNVVKDKTSSTTSKYLIEKQISYEENIRRTLNANIIVDITKENQSGWTLRILEALFFNKKLITNNINVFGSEIYSESRFFIIGHDDWDKLEYFINSSVKPMDYDSLYKFSPDKMMSTIVSDFIDK
21000001101012100100123132320222321110021023011211100210021013314300000011211231002101421301100001112223101100310000010113001313131032111111231432222343323100000011311130022003203412020000002332332223211333020320031023010000012332210111001001122100010110120201031000001231132011003221331323003301031001200231244
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTIYFINWVADYELKMIQYLKKKYKIKNITTPKKYNWINKKISKIGMDNAWLGRLFIKHYLNDIKKDDIIIINDSVVNKGINKQILKNINCHKVLLLRNTVGEDFILDNANYFDIIYDFEHRFIGNEKIKAIEQFFPIGMDEIRNYSLSDKNNSQPICFFLGRDKGRLQIINELAERLTTLGCKLDFNVVKDKTSSTTSKYLIEKQISYEENIRRTLNANIIVDITKENQSGWTLRILEALFFNKKLITNNINVFGSEIYSESRFFIIGHDDWDKLEYFINSSVKPMDYDSLYKFSPDKMMSTIVSDFIDK
1	MUSTER	3rhzA	0.095	0.916	0.905	threading_1	MRVYITNINGQLCQNTVTDVAVSLGYRELGIYC---------YQIHTDSESELSKRLDGIVAGLRHGDVVIFQTPTWNEKLMNKLKLY-DIKIVLFIHDFYLMDRTIAYYNKADVVVAPSIDKLRDFGMN-VSKTVVQGMWDHPTQAPMFPAGLKREIHFPG-NPERFSFVK-------EWKYDIPLKVYTWQNVELPQNVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKYCSYKLGSFLAAGIPVIVQE-GIANQELIENNGLGWI--KDVEEAIMKVKN----VNEDEYIELVVRSFNPILRKFFTRR
2	SPARKS	2geja	0.081	0.990	1.371	threading_2	MRIGMVCPVPGGVQSHVLQLAEVLRDAGHEASPHVKLPDYVVSGGKAVFGPATHRKVKKWIAEGDFDVLHIH--EPNAPSLSMLALQAAEGPIVATFHTSTTQGILRPYHEKIIGRIAVSDLARRWQDAVEIPNGVDVASFADAPLLDGYPREGRTVLFLGRYDEPRMAVLLAALPKLVARFPDVEILIVGRGDEDELREQAGDLQVDDATKASAMRSADVYCA-PHLGGESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQSERVHRYDWSVVSAQIMRVYETV
3	PROSPECT2	1f0ka	0.092	0.949	1.746	threading_3	WQVRWLGTADRMEADLVPKHGIEIDFIRISGLRGKGI---KALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYV--SGPGGLAAWSLGIPVVLHEQNGIAGLTNKWLAKIATKVMQAF----PGAFPNAEVVGNPVRTDVLALPLPQAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQSGKGSQEAGQPQHKVTEFIDDMAAAYAWADVVVC------RSGALTVSEIAAAGLPALFDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANT-LAGWSRETLLTMATERVANEVSRVARAL
4	PPA-I	3oy2A	0.132	0.971	1.168	threading_4	MKLIIVGAHSSYGRVMRAIVPRISKARSVHANIEEFDAQTAEHVRGLNEQGFYYSGLSEFIDVHKPDIVMIYNDPIVIGNYLLAMGKCSHRTKIVLYVDLVSKNIRENLWWIFVGVMAMSISDICNYGCKVPINIVSHTKTIYDARKLVGLSEYNDDVLFLTARKRLDIYVLAAARFISKYDAKVRFLCNSHHESKFDKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLC--SAEGAVLGKPLIISAVGGAD-DYFSGDCVYKIKPSAWIS------VDDRDGIGGIEGIIDVDDLVEAFTFFKDEK
5	HHPRED-l	3okp_A	0.088	0.987	1.696	threading_5	RKTLVVTNDFRIGQSYLRDFIATQDPESIVSTQNAEEYDKTLDRWPMLPTPTTAHAMAEIIREREIDNVWFGAAAPLA-LMAGTAKQAGASKVIASTHGHEVGLPLRKIGTEVDVLTYISQYTLRRFGSHPTFEHLPSGVDV-KRFTPPEDDTTPVIACNSRLVPKGQDSLIKAMPQVIAARPDAQLLIVGSGRYESSQNVKFLGRLEYQDMINTLAAADIFAMPARTDVEGLGIVYLEAQACGVPVIAGTSGGA-PETVTPATGLVVEGSDVDKLSELLDDPRAAMGAHVEAEWSWEIMGERLTNILQS-
6	HHPRED-g	3okp_A	0.085	0.984	2.697	threading_6	RKTLVVTNDFRIGRDFIATQD-PESIVVFASTQNAEEA-HAYDKLDMLPTPTTAHAMAEIIREREIDNVWFGAAAPLAL-MAGTAKQAGASKVIASTHGHEGLQSLRKIGTEVDVLTYISQYTLRRFGSHP-TFEHLPSGVDVKRFTPTPDDTTPVIACNSRLVPRGQDSLIKAMPQVIAARPDAQLLIVGSGRYESSQNVKFLGRLEYQDMINTLAAADIFAMPARTDVEGLGIVYLEAQACGVPVIAGTSGGAP-ETVTPATGLVVEGSDVDKLSELLIELLDAMGAHVEAEWSWEIMGERLTNILQSE
7	SP3	2jjma	0.108	0.984	1.262	threading_7	LKIGITCYSGVVGTELGKQLAERITSGLPKVYPNIYFHEVTVNFQYPPYDLALASKMAEVAQRENLD--ILHVHYAIPHAICAYLAKQERIKIVTLGSDPSLNNLIRFGIEQSDVVTAVSHSLINETHELVKPNYNFIDERVYFKRDMTQEYGISKILIHISRKVKRVQDVVQAFAKIVTE-VDAKLLLVFCTILQLVKNLHIEDRVLFDNVAELLAMSDLMLLLSE--KESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEEESVYEQFRSEKIVSQYETIYYDV
8	SAM-T99	1poiA	0.102	0.534	0.643	threading_8	-------DEWGISKEVRKTLDKVPDDKYIDNPFKPGEIIHAQQASPDGTVRIWGGKFQDVDIAEAAKYTIVTCEEIISDEEIRRTKNDIPCVDAVVLAPYGAHPSQC-------------------YGLYDYDNPFLKVYD---KVSKTQED------------------------------------------FDAFCKEWVFDLKDHDEYLNKLGATRLI-----------------------------------------NLKVVPGLGYHIDMT---------------------------------
9	MUSTER	3oy2A	0.143	0.987	0.881	threading_9	MKLIIVGAHSSVMRAIVPRISKAFGIHAFGRSVEEFDAQTAEHVRGLNEQGFYYSGLSEFIDVHKPDIVMIYNDPIVIGNYLLAMGKCSHRTKIVLYVDLVSKNIRENLWWIFVGVMAMSISDICNYGCKVPINIVSHFTKTIYDVGLSEYNDDVLFLNMNRNTARLDIYVLAAARFISKYDAKVRFLCNSHHESKFDKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLC--SAEGAVLGKPLIISAVGGAD-DYFSGDCVYKIKPSDVDDLVEAFTFFKDE-QDFVKTKPTWDDISSDIIDFFNSR
10	SPARKS	2jjma	0.095	0.981	1.252	threading_10	LKIGITGGSGVVGTELGKQLAERITSGLPKVYPNIYFHEVTVNFQYPPYDLALASKMAEVAQRENLD-ILHVHYAIPHAICAYLAKQMIGERIKIVTSDPSLNNLIRFGIEQSDVVTAVSHSLINETHELVKPNYNFIDERVYFKRDMTQEYGISKILIHISNFRKVVQDVVQAFAKIVT-EVDAKLLLVGDKNLHIEDRVLFLGKQD--NVAELLAMSDLMLLLSEK--ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEEESVYEQFRSEKIVSQYETIYYDV

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.678 to 2bisA SCOP code=c.87.1.8	TM-score=0.591 to 1cozA SCOP code=c.26.1.2	TM-score=0.736 to 2iw1A SCOP code=c.87.1.8	TM-score=0.709 to 1f0kA SCOP code=c.87.1.2	TM-score=0.664 to 2iw1A SCOP code=c.87.1.8