Template-based Modeling Results for RFAQ_ECOLI

Submitted Primary Sequence

>Length 344
MRYHGDMLLTTPVISTLKQNYPDAKIDMLLYQDTIPILSENPEINALYGISNKGAGTFDKIKNVLSLIKTLRANNYDLVINLTDQWMVALLVRCLPARMKISQLYGHRQHGIWKKSFTHLAPIHGTHIVERNLSVLEPLGITDFYTDTTMSYAEDCWKKMRRELDALGVKDHYVVIQPTARQIFKCWDNDKFSKVIDALQQRGYQVVLTCGPSADDLACVDEIARGCETKPITGLAGKTRFPELGALIDHAVLFIGVDSAPGHIAAAVKTPVISLFGATDHVFWRPWTENIIQFWAGNYQKMPTRHELDRNKKYLSVIPAEDVIAATEKLLPEDAPSADRNAQL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRYHGDMLLTTPVISTLKQNYPDAKIDMLLYQDTIPILSENPEINALYGISNKGAGTFDKIKNVLSLIKTLRANNYDLVINLTDQWMVALLVRCLPARMKISQLYGHRQHGIWKKSFTHLAPIHGTHIVERNLSVLEPLGITDFYTDTTMSYAEDCWKKMRRELDALGVKDHYVVIQPTARQIFKCWDNDKFSKVIDALQQRGYQVVLTCGPSADDLACVDEIARGCETKPITGLAGKTRFPELGALIDHAVLFIGVDSAPGHIAAAVKTPVISLFGATDHVFWRPWTENIIQFWAGNYQKMPTRHELDRNKKYLSVIPAEDVIAATEKLLPEDAPSADRNAQL
CCHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEECCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCEEEEECCCCHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRYHGDMLLTTPVISTLKQNYPDAKIDMLLYQDTIPILSENPEINALYGISNKGAGTFDKIKNVLSLIKTLRANNYDLVINLTDQWMVALLVRCLPARMKISQLYGHRQHGIWKKSFTHLAPIHGTHIVERNLSVLEPLGITDFYTDTTMSYAEDCWKKMRRELDALGVKDHYVVIQPTARQIFKCWDNDKFSKVIDALQQRGYQVVLTCGPSADDLACVDEIARGCETKPITGLAGKTRFPELGALIDHAVLFIGVDSAPGHIAAAVKTPVISLFGATDHVFWRPWTENIIQFWAGNYQKMPTRHELDRNKKYLSVIPAEDVIAATEKLLPEDAPSADRNAQL
34300000000000110142013020000013101100220230110000133222223203100100210232311000002211000000200202120011222232001220123222231210021001003302123222312121233013202310331223320000001033223102231002002002421120000002223112001200310323200000130202100000220100000000000001004110000000012220211232000010232221114331242330123020310020024004332222343244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRYHGDMLLTTPVISTLKQNYPDAKIDMLLYQDTIPILSENPEINALYGISNKGAGTFDKIKNVLSLIKTLRANNYDLVINLTDQWMVALLVRCLPARMKISQLYGHRQHGIWKKSFTHLAPIHGTHIVERNLSVLEPLGITDFYTDTTMSYAEDCWKKMRRELDALGVKDHYVVIQPTARQIFKCWDNDKFSKVIDALQQRGYQVVLTCGPSADDLACVDEIARGCETKPITGLAGKTRFPELGALIDHAVLFIGVDSAPGHIAAAVKTPVISLFGATDHVFWRPWTENIIQFWAGNYQKMPTRHELDRNKKYLSVIPAEDVIAATEKLLPEDAPSADRNAQL
1	MUSTER	3tovA	0.247	0.919	2.444	threading_1	FLHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQV-EYNPNIDELIVVDKKGR--HNSISGLNEVAREINAKKTDIVINLHPNERTSYLAWKIHAPITTGSHFLFRPFT------KYTRLDRKTRHAADYINVLEQLGVTDTSNSLHIEICEEWRCQAQEFYSSHGLTDILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPDLEVQPVVEQE------TKPIVATGKFQLGPLAAA--RCNLLITNDSGP-HVGISQGVPIVALYGPSNPFFYGPYQAHAIVLETDSYEIGKSKKIIKGNYKGLSVISEEQVIKAAETLLLES----------
2	SPARKS	3tova	0.243	0.922	5.593	threading_2	FLHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQV-EYNPNIDELIVVDKKG--RHNSISGLNEVAREINAKKTDIVINLHPNERTSYLAWKIHAPITTGSHFLFRPFT------KYTRLDRKTRHAADYINVLEQLGVTDSNSGLHIEICEEWRCQAQEFYSSHGLTDILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPDLEVQPVVE------QETKPIVATGKFQLGPLAA-ANRCNLLITNDSG-PHVGISQGVPIVALYGPSNPFFYGPYQAHAIVLETDSYEIGKSKKIIKGNYKGLSVISEEQVIKAAETLLLES----------
3	PROSPECT2	3tovA	0.246	0.922	3.940	threading_3	FLHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQ-QVEYNPNIDELIVVDKKG--RHNSISGLNEVAREINAGKTDIVINLHPNERTSYLAWKIHAPITTGSHFLFRPF------TKYTRLDRKTRHAADYINVLEQLGVTDTNSGLHIEICEEWRCQAQEFYSSHGLTDILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPDLEVQPVVE------QETKPIVATGKFQLGPL-AAANRCNLLITNDSGP-HVGISQGVPIVALYGPSNPFFYGPYQAHAIVLETDSYEIGKSKKIIKENYKGLSVISEEQVIKAAETLLLES----------
4	PPA-I	3tovA	0.243	0.922	3.013	threading_4	FLHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQ-VEYNPNIDELIVVDKKGR--HNSISGLNEVAREINAKKTDIVINLHPNERTSYLAWKIHAPITTGSHFLFRP------FTKYTRLDRKTRHAADYINVLEQLGVTDTSSGLHIEICEEWRCQAQEFYSSHGLTDILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPDLEVQPVVEQE------TKPIVATGKFQLGPLAAAN-RCNLLITNDSG-PHVGISQGVPIVALYGPSNPFFYGPYQAHAIVLETDSYEIGKSKKIIKGNYKGLSVISEEQVIKAAETLLLES----------
5	HHPRED-l	3tov_A	0.259	0.910	7.100	threading_5	L-HLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQV-EYNPNIDELIVVDKKGR--HNSISGLNEVAREINAKGKDIVINLHPNERTSYLAWKIHAPITTG-SHFLFRP-----F-TKYTDRKTRHAAD-YINVLEQLGVTDTSNSLHIEICEEWRCQAQEFYSSHGDTDILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGP---DLE-VQPVVEQ-ET-KPIVATGKFQLGPLAAA-NRCNLLITNDSGP-HVGISQGVPIVALYGPSNPFFYGPYQAHAIVLEDSYEIGKS-KKIIKENYKGLSVISEEQVIKAAETLLLES----------
6	HHPRED-g	3tov_A	0.254	0.916	6.671	threading_6	L-HLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQV-EYNPNIDELIVVDKKGR--HNSISGLNEVAREINAKGKDIVINLHPNERTSYLAWKIHAPITTG--SHFLFRPF-TKYTR--LDRKTRHAAD-YINVLEQLGVTDTSNSLHIEICEEWRCQAQEFYSSHGDTDILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGP---DLE-VQPVVEQ-ET-KPIVATGKFQLGPLAAA-NRCNLLITNDSGP-HVGISQGVPIVALYGPSNPFFYGPYQAHAIVLEDSYEIGKS-KKIIKEGYKGLSVISEEQVIKAAETLLLES----------
7	SP3	3tova	0.243	0.922	6.098	threading_7	FLHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQV-EYNPNIDELIVVDKKGR--HNSISGLNEVAREINAKKTDIVINLHPNERTSYLAWKIHAPITTGSHFLFRP------FTKYTRLDRKTRHAADYINVLEQLGVTDTNSGLHIEICEEWRCQAQEFYSSHGLTDILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPDLEVQPVVE------QETKPIVATGKFQLGPLAA-ANRCNLLITNDSG-PHVGISQGVPIVALYGPSNPFFYGPYQAHAIVLETDSYEIGKSKKIIKGNYKGLSVISEEQVIKAAETLLLES----------
8	SAM-T99	1pswA	0.212	0.863	4.729	threading_8	PSWVGD---SQSLYRTLQARYPQAIID-VAPAWCRPLLSR-PEVNEAIPEIGE----------RRKLGHSLREKRYDRAYVLPNSFKSALVPLFAGIPHRTGWRGE----RYGLLNDVRVLDKEAWPLVERYIALATAQDLPQPLLWPQLQVSEGEKSYTCNQF---SLSERPIGFCPGAEFPAKRWPHYHYAELAKQLIDEGYQVVLFGSAK--DHEAGNEILAALNQAWCRNLAGETQLDQAVILIAACKAIVTNDSG-LHVAAALNRPLVALYGPSSPDFTPPLSHKARVIRL---------ITGEGYHQSLIDITPQRVLEELNALL-------------
9	MUSTER	2gt1A	0.197	0.901	2.394	threading_9	TSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSWHAAVERVIPVAIKAWFSAPIKAERKAFREALQAKNYDAVIDAQGLVKSAALVTRLAHGVKHGMDWQTAREPLASLFYNKHHIAKQQHAVERTRELFAKSGYSKPQTQGDYAIAQHFLTNL------PTDAGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGA-PHEEERAKRLAEGFA---YVEVLPKMSLEGVARVLAGAKFVVSVDTGLSHLTAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPGNE--------------LSQLTANAVKQFIEENAEKA----------
10	SPARKS	2gt1a	0.203	0.901	4.846	threading_10	TSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSWHAAVERVIPVARKAWFSAPIKAERKAFREALQAKNYDAVIDAQGLVKSAALVTRLAHGVKHGMDWQTAREPLASLFYNRKHHIAQQHAVERTRELFAKLGYSKPQTQGDYAIAQHFLTNL------PTDAGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWG-APHEEERAKRLAEGFAY---VEVLPKMSLEGVARVLAGAKFVVSVDTGLSHLTAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPGNE--------------LSQLTANAVKQFIEENAEKA----------

Predicted Tertiary Structure


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TM-score=0.789 to 1pswA SCOP code=c.87.1.7	TM-score=0.801 to 1pswA SCOP code=c.87.1.7	TM-score=0.796 to 1pswA SCOP code=c.87.1.7	TM-score=0.793 to 1pswA SCOP code=c.87.1.7	TM-score=0.793 to 1pswA SCOP code=c.87.1.7