Template-based Modeling Results for RFAP_ECOLI

Submitted Primary Sequence

>Length 265
MVELKEPLATLWRGKDAFAEVKKLNGEVFRELETRRTLRFELSGKSYFLKWHKGTTLKEIIKNLLSLRMPVLGADREWHAIHRLSDVGVDTMKGIGFGEKGLNPLTRASFIITEDLTPTISLEDYCADWAVNPPDIRVKRMLIARVATMVRKMHTAGINHRDCYICHFLLHLPFTGREDELKISVIDLHRAQIRAKVPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFGMPLRKILSLEQNLLNMASVKAERIKERTQRKGL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MVELKEPLATLWRGKDAFAEVKKLNGEVFRELETRRTLRFELSGKSYFLKWHKGTTLKEIIKNLLSLRMPVLGADREWHAIHRLSDVGVDTMKGIGFGEKGLNPLTRASFIITEDLTPTISLEDYCADWAVNPPDIRVKRMLIARVATMVRKMHTAGINHRDCYICHFLLHLPFTGREDELKISVIDLHRAQIRAKVPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFGMPLRKILSLEQNLLNMASVKAERIKERTQRKGL
CCCCCHHHHHHHCCCCCHHHHHCCCCCEEECCCCCCEEEEEECCEEEEEEEEECCCHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MVELKEPLATLWRGKDAFAEVKKLNGEVFRELETRRTLRFELSGKSYFLKWHKGTTLKEIIKNLLSLRMPVLGADREWHAIHRLSDVGVDTMKGIGFGEKGLNPLTRASFIITEDLTPTISLEDYCADWAVNPPDIRVKRMLIARVATMVRKMHTAGINHRDCYICHFLLHLPFTGREDELKISVIDLHRAQIRAKVPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFGMPLRKILSLEQNLLNMASVKAERIKERTQRKGL
5531332112113232111202312120022242321010202220000110102103200320022312111012102002101312030020000012232222210000012022112012002221323332311220022002002300301020200200000021122244430200000033021223022211020010001001302121210010021112112230121123102101110321323224424
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MVELKEPLATLWRGKDAFAEVKKLNGEVFRELETRRTLRFELSGKSYFLKWHKGTTLKEIIKNLLSLRMPVLGADREWHAIHRLSDVGVDTMKGIGFGEKGLNPLTRASFIITEDLTPTISLEDYCADWAVNPPDIRVKRMLIARVATMVRKMHTAGINHRDCYICHFLLHLPFTGREDELKISVIDLHRAQIRAKVPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFGMPLRKILSLEQNLLNMASVKAERIKERTQRKGL
1	MUSTER	2jiiB	0.116	0.913	0.983	threading_1	--TENLYFQSMTTSLEALP-----TGTVLTDKSGRQLYEAAPTSQKFSLKLDAKDGRLFNEQNFFQ----RAAKPLQVNKWKKLYSTPLAIPTCMGFGVHQDK----YRFLVLPSLGR--SLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIFVDPEDQS-----QVTLAGYGFAFRGKHVAYVEGSRSPHE-MDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQKFVDKPGPF
2	SPARKS	3op5a	0.150	0.879	2.567	threading_2	---------------EQFA-----VGEIITDMAAAAIYLADMNDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKL--KYLGVPKYWGSGLHDKNG-KSYRFMIMDRFGS--DLQKIYEA-NAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQ-----VYLVDYGLAGVHKAYAADPK-RCHDGTIEFTSIDAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASL
3	PROSPECT2	2qg7A	0.111	0.921	1.507	threading_3	YPDRSEKAKELLKKYVSKYVMLHYGKDLVNPNEVDSLEFQIINGTNILIKVKDMSKQAKYLIRLYGPTDEIINREREKKISCILYNKNIAKKIYVFF----------TNGRIEEFMDGYALYKELQVTQKVPGTRPSFLWNTIWKYFHLLNEERKKICCHCDLLSSNIIN-----TVGEGDSISFIDFEYSCPM------ERAYDIANHFNEYAGFNCSKEEEYHFIMHYLGTDDEELINQLIREINYGMTRLTASCLPIFRSKV
4	PPA-I	3en9A2	0.135	0.725	1.434	threading_4	--------------------------------AEADIKRDSYLDFDVIIKERVKKGY---RDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNK-------RIMMSYING-----------KLAKDVIEDNLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDKD---------LYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV-----------
5	HHPRED-l	2h34_A	0.169	0.713	1.250	threading_5	------------------------LRRLVGRGG-GDVYEAEVRERIVALKL-SETL--------SSDPVFRTR-QREARTAGRLQEPHV--VPIHDFGEID-----GQLYVD-RLING-VDLAA-LRRQ--GPLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSA-------DDFAYLVDFGI----------------GTLYY-APERFSYRADIYALCVLYEGPPYQGD--QLSV-GAHINQVIARG-AKNDRYA-
6	HHPRED-g	1csn_A	0.207	0.804	1.671	threading_6	--------------------------NVVGRRIGEGSFGVIFNNQQVAIKFE--------------PRRSDAPQRDEYRTYKLL-AGCTGIPNVYYFGQEGL-----HNVLVIDLLGP--SLEDLLD-LCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSK--NANMIYVVDFGMVKFYRHIPYRE-KKNLSGTARYMSGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSAGF
7	SP3	3op5a	0.148	0.921	2.851	threading_7	QFAVGEIITDMAAAA------WKVGGCIYLADMNSSESV--GSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKL--KYLGVPKYWGSGLHDKNGK-SYRFMIMDRFGS--DLQKIYEA-NAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKN-----PDQVYLVDYGLAGVHKAYAADPK-RCHDGTIEFTS-IAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASL
8	SAM-T99	3f69B	0.173	0.808	1.207	threading_8	-------------------------GEILGFGGMSEVHLARDDHRDVAVKV--------LRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPY---IVMEYVDG-VTLRDIVHTE--GPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANILIS-------ATNAVKVVDFGIARAIA--DSGNSVQTIGTAQYLSPEQVDARSDVYSLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEG---
9	MUSTER	2izsA	0.156	0.845	0.963	threading_9	VLMVGPNFR----------------GKKIGCGNFGELRLGKNTNEYVAIKLEPMKS-------------RAPQLHLEYRFYKQLGSGGI--PQVYYFGPCGKY-----NAMVLELLGP--SLEDLFDLCD-RTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQ--VIHIIDFALAKTKKHIPYREHKSLTGTAINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPI
10	SPARKS	2lava	0.147	0.947	2.504	threading_10	MPRVKAAQAGRQSSAKRHLAEQFAVGEIITDMAKKEIYLADMSDAPCVVKVEPSDNLFTELKFYQRAA----KPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNG-KSYRFMIMDRFGS--DLQKIYEA-NAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQ-----VYLVDYGLAGVHKEYKEDPK-RCHDGTIEFTSIDAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASL

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.657 to 2csnA SCOP code=d.144.1.7	TM-score=0.660 to 2csnA SCOP code=d.144.1.7	TM-score=0.631 to 1ckjA SCOP code=d.144.1.7	TM-score=0.571 to 2b0qA SCOP code=d.144.1.6	TM-score=0.532 to 1nd4A SCOP code=d.144.1.6