Template-based Modeling Results for RFAI_ECOLI

Submitted Primary Sequence

>Length 339
MQQVFFQETEFLNSVIDYDHKVETENLCLDIAYGTDKNFLFGCGISIASILKYNEGSRLCFHIFTDYFGDDDRKYFDALALQYKTRIKIYLINGDRLRSLPSTKNWTHAIYFRFVIADYFINKAPKVLYLDADIICQGTIEPLINFSFPDDKVAMVVTEGQADWWEKRAHSLGVAGIAKGYFNSGFLLINTAQWAAQQVSARAIAMLNEPEIIKKITHPDQDVLNMLLADKLIFADIKYNTQFSLNYQLKESFINPVTNDTIFIHYIGPTKPWHDWAWDYPVSQAFMEAKNASPWKNTALLKPNNSNQLRYSAKHMLKKHRYLKGFSNYLFYFIEKIKH
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MQQVFFQETEFLNSVIDYDHKVETENLCLDIAYGTDKNFLFGCGISIASILKYNEGSRLCFHIFTDYFGDDDRKYFDALALQYKTRIKIYLINGDRLRSLPSTKNWTHAIYFRFVIADYFINKAPKVLYLDADIICQGTIEPLINFSFPDDKVAMVVTEGQADWWEKRAHSLGVAGIAKGYFNSGFLLINTAQWAAQQVSARAIAMLNEPEIIKKITHPDQDVLNMLLADKLIFADIKYNTQFSLNYQLKESFINPVTNDTIFIHYIGPTKPWHDWAWDYPVSQAFMEAKNASPWKNTALLKPNNSNQLRYSAKHMLKKHRYLKGFSNYLFYFIEKIKH
CCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCEEECCCHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCEEECCCCEEEECCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MQQVFFQETEFLNSVIDYDHKVETENLCLDIAYGTDKNFLFGCGISIASILKYNEGSRLCFHIFTDYFGDDDRKYFDALALQYKTRIKIYLINGDRLRSLPSTKNWTHAIYFRFVIADYFINKAPKVLYLDADIICQGTIEPLINFSFPDDKVAMVVTEGQADWWEKRAHSLGVAGIAKGYFNSGFLLINTAQWAAQQVSARAIAMLNEPEIIKKITHPDQDVLNMLLADKLIFADIKYNTQFSLNYQLKESFINPVTNDTIFIHYIGPTKPWHDWAWDYPVSQAFMEAKNASPWKNTALLKPNNSNQLRYSAKHMLKKHRYLKGFSNYLFYFIEKIKH
555222332300221132334232331000000001210010000000000321322200000001201330230021003314120210102132021111231111000010000210133111000000000010101100201123110000012021211111022121111131111100000002210132011101100222312331221211000000132001011200000112131332002212320000000021211222112110020001013103133222132322310210032014222102000000110023135
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MQQVFFQETEFLNSVIDYDHKVETENLCLDIAYGTDKNFLFGCGISIASILKYNEGSRLCFHIFTDYFGDDDRKYFDALALQYKTRIKIYLINGDRLRSLPSTKNWTHAIYFRFVIADYFINKAPKVLYLDADIICQGTIEPLINFSFPDDKVAMVVTEGQADWWEKRAHSLGVAGIAKGYFNSGFLLINTAQWAAQQVSARAIAMLNEPEIIKKITHPDQDVLNMLLADKLIFADIKYNTQFSLNYQLKESFINPVTNDTIFIHYIGPTKPWHDWAWDYPVSQAFMEAKNASPWKNTALLKPNNSNQLRYSAKHMLKKHRYLKGFSNYLFYFIEKIKH
1	MUSTER	1ss9A	0.200	0.782	2.089	threading_1	----------------------------MDIVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNRHISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGACIDLFV--ERQEGYKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSCEWVEQY--KDVMQYQDEDILNGLFKGGVCYANSRFNFMPSRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDC-TAWGAERFTELAGSEEWRGKL----------------------------------------
2	SPARKS	1ga8a	0.203	0.785	5.246	threading_2	-----------------------------DIVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNRHISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVER---QEGYKQKIGADGEYYFNAGVLLINLKKWRRHDIFKSSEWVEQY----KDVQYQDQDILNGLFKGGVCYANSRFNFPTAFASRHTDPLYRDRTVPVAVSHYCGPAKPWHRDC-TAWGAERFTELAGSLTTVPEEWRGKL-----------------------------------
3	PROSPECT2	1ga8a	0.207	0.785	3.195	threading_3	-----------------------------DIVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPNIRHISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQK---IGADGEYYFNAGVLLINLKKWRRHDIFKSSEWVEQY----KDVQYQDQDILNGLFKGGVCYANSRFNFPFASRHTDPLYRDRTNTVPVAVSHYCGPAKPWHR-DCTAWGAERFTELAGSLTTVPEEWRGKL-----------------------------------
4	PPA-I	1ss9A	0.193	0.796	2.828	threading_4	----------------------------MDIVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNRHISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGACIDLFV--ERQEGYKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSCEWVEQY--KDVMQYQDEDILNGLFKGGVCYANSRFNFMASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAW-GAERFTELAGSLTTVPEEWRGKL-----------------------------------
5	HHPRED-l	3tzt_A	0.188	0.643	7.849	threading_5	---------------------------ADALLLTLDENYIPQ-KVL-TSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRAT-------------PKE-YYRLLAGEFLPENLGEILYLDPD-LVINPLDDLLRTDISDYILAAASH----------------------YYNSGLLLINLKRAREEIDPDEIFSFVEDN----------QDILNA-YGDRIYPLDDIYNYDARNYSSYLQADLAWL-DHTVVLHFCGRDKPWKKNH-RNKFTSLYKHY-SLTKRY---LA--------------------------------------
6	HHPRED-g	3tzt_A	0.183	0.643	6.934	threading_6	---------------------------ADALLLTLDENYIPQ-KVL-TSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRAT-------------PKE-YYRLLAGEFLPENLGEILYLDPD-LVINPLDDLLRTDISDYILAAASH----------------------YYNSGLLLINLKRAREEIDPDEIFSFVEDN----------QDILNA-YGDRIYPLDDIYNYDARNYSSIRSKQLAWL-DHTVVLHFCGRDKPWKKNH-RNKFTSLYKHY-SLTKRYL----A-------------------------------------
7	SP3	1ga8a	0.201	0.779	5.074	threading_7	-----------------------------DIVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPNIRHISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDL---FVERQEGYKQKIGADGEYYFNAGVLLINLKKWRRHDIFKSSEWVEQYKD----VQYQDQDILNGLFKGGVCYANSRFNFPTNYAHTDPLYRDRTNTVPVAVSHYCGPAKPWHRDCTAWGA-ERFTELAGTTVPEEWRGKL-------------------------------------
8	SAM-T99	1ss9A	0.200	0.752	7.837	threading_8	----------------------------MDIVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNRHISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGACIDLFV--ERQEGYKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSCEWVEQY--KDVMQYQDEDILNGLFKGGVCYANSRFNFMPTNYAFMAYRDRTNTVMPVAVSHYCGPAKPWHRDC-TAWGAERFTEL--------------------------------------------------
9	MUSTER	3tztA	0.182	0.649	1.502	threading_9	---------------------------ADALLLTLDENYIPQ--KVLTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIR--------------ATPKEYYRLLAGEFLPENLGEILYLDPDLVI-NPLDDLLRTDISDYILAAAS----------------------HYYNSGLLLINLKRAREEIDPDEIFSFVEDN----------QDILNAYGDRIYPLDDLIYNYDARNYSSYLIRSDLAWLDHTVVLHFCGRDKPWKKNH-RNKFTSLYKHYSLTKRYLA------------------------------------------
10	SPARKS	3tzta	0.186	0.649	4.218	threading_10	---------------------------ADALLLTLDENYIPQKV--LTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIR--------------ATPKEYYRLLAGEFLPENLGEILYLDPDLVI-NPLDDLLRTDISDYILAAASH----------------------YYNSGLLLINLKRAREEIDPDEIFSFVED----------NQDILNAYGDRIYPLDDLIYNYDARYLIRSKKQADLAWLDHTVVLHFCGRDKPWKKNHRN-KFTSLYKHYSLTKRYLA------------------------------------------

Predicted Tertiary Structure


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TM-score=0.853 to 1ss9A SCOP code=c.68.1.4	TM-score=0.851 to 1ss9A SCOP code=c.68.1.4	TM-score=0.863 to 1ss9A SCOP code=c.68.1.4	TM-score=0.864 to 1ss9A SCOP code=c.68.1.4	TM-score=0.871 to 1ss9A SCOP code=c.68.1.4