Template-based Modeling Results for RFAH_ECOLI


  Submitted Primary Sequence

>Length 162
MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL
CCEEEEEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEECCCCEEEEEEEECCCCHHHEECCCCEEEEECCCCEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECHHHEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL
421000000220113101310243211000011222222343322121210210000000122222210221310000023221002122210210122333322332222311200012111410201022123422000001002230312022310122
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL
1MUSTER2xhcA20.2240.9073.729threading_1-KKWYIVLTMSGYEEKVKENIEKKVGRIVIPEE-------------RRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGLEEYE-LGFKVGDMVKIISGPFEDFAGVIKEIDPERELKVNVTIFGRETPVVLHVSEVEKI
2SPARKS1m1ga0.1731.0005.051threading_2EKKWYALQVEPGKENEAKENLLKVVDEVIVPAEEKVVIRAQAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIKRGVKPSKEFEKGDQVRVIEGPFMNFTGTVEEVHPERKLTVMISIFGRMTPVELDFDQVEKI
3PROSPECT22xhcA20.2240.9072.795threading_3-KKWYIVLTMSGYEEKVKENIEKKVGRIVIPEER-------------RKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGLEEYELG-FKVGDMVKIISGPFEDFAGVIKEIDPERELKVNVTIFGRETPVVLHVSEVEKI
4PPA-I2xhcA20.2240.9074.414threading_4-KKWYIVLTMSGYEEKVKENIEKKVGRIVIPEER-------------RKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGLEEYE-LGFKVGDMVKIISGPFEDFAGVIKEIDPERELKVNVTIFGRETPVVLHVSEVEKI
5HHPRED-l2oug_A1.0000.8705.877threading_5-QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYK--------------KVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKN------
6HHPRED-g1m1h_A0.1760.6306.420threading_6EKKWYALQVEPGKENEAKENLLKLVDEVIVPAEEKVVIRTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIKR------------------------------------------------------------
7SP31m1ga0.1731.0004.864threading_7LKKWYALQVEPGKENEAKENLLKVVDEVIVPAEEKVVIRAEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIKRGVKPSKEFEKGDQVRVIEGPFMNFTGTVEEVHPERKLTVMISIFGRMTPVELDFDQVEKI
8SAM-T992xhcA20.2240.9074.418threading_8-KKWYIVLTMSGYEEKVKENIEKKVGRIVIPEE-------------RRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGL-EEYELGFKVGDMVKIISGPFEDFAGVIKEIDPERELKVNVTIFGRETPVVLHVSEVEKI
9MUSTER2ougA0.9790.8703.493threading_9-QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLS--------------VYKKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKN------
10SPARKS2ouga0.9790.8704.602threading_10-QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLS--------------VYKKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKN------

  Predicted Tertiary Structure

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TM-score=0.615 to 1nppA
TM-score=0.593 to native
SCOP code=b.114.1.1
TM-score=0.615 to 1nppA
TM-score=0.594 to native
SCOP code=b.114.1.1
TM-score=0.685 to 1nppA
TM-score=0.524 to native
SCOP code=b.114.1.1
TM-score=0.611 to 1nppA
TM-score=0.602 to native
SCOP code=b.114.1.1
TM-score=0.615 to 1nppA
TM-score=0.594 to native
SCOP code=b.114.1.1

  Experimental Structure

Download 2ougA
SCOP code=b.114.1.1