Template-based Modeling Results for RFAG_ECOLI

Submitted Primary Sequence

>Length 374
MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITGGLDG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITGGLDG
CEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCCCEEEEEECCCCEECCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHCCCHHHEEEECCCCCHHHCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITGGLDG
11000002311111000100020011014220101000122323134102001010211221121020011012004322010000001000000000021020110011110112111212000001200022131110000023102100421303331010001001132211331230131014313134321000000112233102200200110042133100000023332320120044020310010000131003001000000000222000000000010100000010110121023221000002121131002001300212310210131023003212121002100200110235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITGGLDG
1	MUSTER	2iw1A	1.000	0.989	2.974	threading_1	-IVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITG---G
2	SPARKS	3mboa	0.181	0.973	4.568	threading_2	MKLKIGITCYPSVGGSGVVGTELGKQLAERGHEIHFITSGLPFV-YPNIYFHEVTVNQYSVFQYDLALASKMAEVAQRENLDILHVHYAIPHAICAYLAIGERIKIVTTLHGTDITVLGSDPSLNNLIRFGIE--QSDVVTAVSHSLINETHELVKPN-KDIQTVYNFIDERVYFKRDM----TQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVTEVD-AKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLC-EVGDTTGVADQAIQLLKDEELHRNMGERARESVYEFRSEKIVSQYETIYYDVLRD
3	PROSPECT2	3c48A	0.190	0.984	4.230	threading_3	MRVAMISMHTSPLQGMNVYILSTATELAKQGIEVDIYTRATRPSQGENLRVINIAAGPYEGLSKEAAFTGGMLSFTRRVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAANSYDTPESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGT-----ERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSDTYRHMAEELGVEKRIRFLDPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLV-DGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSWAATAAQLSSLYNDAIHG
4	PPA-I	2iw1A	1.000	0.989	3.850	threading_4	-IVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITGG---
5	HHPRED-l	2iw1_A	1.000	0.989	4.186	threading_5	-IVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITGG---
6	HHPRED-g	3c48_A	0.194	0.965	3.078	threading_6	MRVAMISMHTSPL-GMNVYILSTATELAKQGIEVDIYTRATRPSVAENLRVINIAAGPYEGLSKEAAFTGGMLSFTRKVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVKNSY----DTPICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPG-----TERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGG--DTYRHMAEELGVEKRIRFLDPRSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLV-DGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSWAATAAQLSSLYNDAIAN
7	SP3	3mboa	0.181	0.973	4.796	threading_7	MKLKIGITCYPSVGGSGVVGTELGKQLAERGHEIHFITSGLPFV-YPNIYFHEVTVNQYSVFQYDLALASKMAEVAQRENLDILHVHYAIPHAICAYLAIGERIKIVTTLHGTDITVLGSDPSLNNLIRFGIE--QSDVVTAVSHSLINETHELV-KPNKDIQTVYNFIDERVYFKRDM----TQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVTE-VDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLC-EVGDTTGVADQAIQLLKDEELHRNMGERARESVYEFRSEKIVSQYETIYYDVLRD
8	SAM-T99	3c4qA	0.197	0.979	4.184	threading_8	MRVAMISMHTSPLGGMNVYILSTATELAKQGIEVDIYTRATRPSQGENLRVINIAAGPYEGLSKEELGGMLSFTRREKVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVDTP--ESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGN-DRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDNLRVIICGGP---TYRHMAEELGVEKRIRFLDPRPELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLV-DGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSWAATAAQLSSLYNDAIA-
9	MUSTER	3c4qA	0.193	0.984	2.581	threading_9	MRVAMISMHTSPLGGMNVYILSTATELAKQGIEVDIYTRATRPSQGENLRVINIAAGPYEGLSKEAAFTGGMLSFTRREKYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVDTPESEARRICEQQLVD--NADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSP-GNDRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGG--PTYRHMAEELGVEKRIRFLDPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLV-DGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSWAATAAQLSSLYNDAIAN
10	SPARKS	3c48a	0.190	0.984	4.485	threading_10	MRVAMISMHTSPQQGMNVYILSTATELAKQGIEVDIYTRATRPSQGENLRVINIAAGPYEGLSQLAAFTGGMLSFTRREKYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVKNSTPESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGT-----ERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSDTYRHMAEELGVEKRIRFLDPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLV-DGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSWAATAAQLSSLYNDAIAN

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.994 to 2iw1A TM-score=0.999 to native SCOP code=c.87.1.8	TM-score=0.994 to 2iw1A TM-score=0.999 to native SCOP code=c.87.1.8	TM-score=0.792 to 2iw1A TM-score=0.795 to native SCOP code=c.87.1.8	TM-score=0.654 to 2iw1A TM-score=0.554 to native SCOP code=c.87.1.8	TM-score=0.994 to 2iw1A TM-score=0.999 to native SCOP code=c.87.1.8

Experimental Structure

Download 2iw1A

SCOP code=c.87.1.8