Template-based Modeling Results for RFAF_ECOLI

Submitted Primary Sequence

>Length 348
MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLGHGALEIGERRKLGHSLREKRYDRAYVLPNSFKSALVPFFAGIPHRTGWRGEMRYGLLNDVRVLDKEAWPLMVERYIALAYDKGIMRTAQDLPQPLLWPQLQVSEGEKSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDSGLMHVAAALNRPLVALYGPSSPDFTPPLSHKARVIRLITGYHKVRKGDAAEGYHQSLIDITPQRVLEELNALLLQEEA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLGHGALEIGERRKLGHSLREKRYDRAYVLPNSFKSALVPFFAGIPHRTGWRGEMRYGLLNDVRVLDKEAWPLMVERYIALAYDKGIMRTAQDLPQPLLWPQLQVSEGEKSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDSGLMHVAAALNRPLVALYGPSSPDFTPPLSHKARVIRLITGYHKVRKGDAAEGYHQSLIDITPQRVLEELNALLLQEEA
CEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCHHCCCCEEECCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCEEEEECCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLGHGALEIGERRKLGHSLREKRYDRAYVLPNSFKSALVPFFAGIPHRTGWRGEMRYGLLNDVRVLDKEAWPLMVERYIALAYDKGIMRTAQDLPQPLLWPQLQVSEGEKSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDSGLMHVAAALNRPLVALYGPSSPDFTPPLSHKARVIRLITGYHKVRKGDAAEGYHQSLIDITPQRVLEELNALLLQEEA
210000000200000000000210132023010000012102100230230110000122322230110220021024231100000221010000000010201001213122111121222343222100210010022211232233122212213131231111100331222232200000000321323301221001003101332010000012311300220022022322220110013020310010010020000000000000100411000000101131001113201001111212313313123212300230103200210221133334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLGHGALEIGERRKLGHSLREKRYDRAYVLPNSFKSALVPFFAGIPHRTGWRGEMRYGLLNDVRVLDKEAWPLMVERYIALAYDKGIMRTAQDLPQPLLWPQLQVSEGEKSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDSGLMHVAAALNRPLVALYGPSSPDFTPPLSHKARVIRLITGYHKVRKGDAAEGYHQSLIDITPQRVLEELNALLLQEEA
1	MUSTER	1pswA	0.969	0.917	2.683	threading_1	-KILVIGPSWVGD---SQSLYRTLQARYPQAIIDVA-PAWCRPLLS-RPEVNEAIP--------EIGERRKLGHSLREKRYDRAYVLPNSFKSALVPLFAGIPHRTGWRGE-RYGLLNDVRVLDKE-AWPLVERYIALAYDKGI-RTAQDLPQPLLWPQLQVSEGEKSYTCNQFSLSSERP-IGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDSG-LHVAAALNRPLVALYGPSSPDFTPPLSHKARVIRLI----------TGEGYHQSLIDITPQRVLEELNALLLQEEA
2	SPARKS	3tova	0.229	0.943	5.706	threading_2	YKRIVVTFLHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQV-EYNPNIDELIVVDKKGRHNSISGLNEVAREINAKKTDIVINLHPNERTSYLAWKIHAPITTGSHFLFRP--FTKYTRLDRKT--RHAADYINVLEQLGVTDTSNSGLHIEICEE---WRCQAQEFYSSHGLTDTDILIGFNIGSAV-PEKRWPAERFAHVADYFGRLGYKTVFFGGPDLEV--QPVVE-----QETKPIVATGKFQLGPLAA-ANRCNLLITNDSG-PHVGISQGVPIVALYGPSNPFFYGPYQAHAIVLETDSYEIGKSKKIIKEGNYKGLSVISEEQVIKAAETLLLES--
3	PROSPECT2	3tovA	0.226	0.943	4.167	threading_3	YKRIVVTFLHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQ-QVEYNPNIDELIVVDKKGRHNSISGLNEVAREINAGKTDIVINLHPNERTSYLAWKIHAPITTGSHFLFRPFTKYTRLDRKT----RHAADYINVLEQLGVTDTS---NSGLHIEICEEWRCQAQEFYSSHGLTDTDILIGFNIGSAV-PEKRWPAERFAHVADYFGRLGYKTVFFGGPDLEVQPVV-------EQETKPIVATGKFQLGPL-AAANRCNLLITNDSGP-HVGISQGVPIVALYGPSNPFFYGPYQAHAIVLETDSYEIGKSKKIIKEGNYKGLSVISEEQVIKAAETLLLE--S
4	PPA-I	1pswA	0.887	0.917	3.258	threading_4	-KILVIGPSWVGD---SQSLYRTLQARYPQAIIDVAPA--WCRPLLSRPEVNEAI--------PEIGERRKLGHSLREKRYDRAYVLPNSFKSALVPLFAGIPHRTGWRGERYG--LLNDVRVLDKEAWPLVERYIALAYDKGIRTAQ-DLPQPLLWPQLQVSEGEKSYTCNQFSLSSERP-IGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDSG-LHVAAALNRPLVALYGPSSPDFTPPLSHKARVIRLI----------TGEGYHQSLIDITPQRVLEELNALLLQEEA
5	HHPRED-l	1psw_A	0.997	0.914	7.684	threading_5	-KILVIGPSWVGD---SQSLYRTLQARYPQAIIDV-APAWCRPLLSR-PEVNEAIP--------EIGERRKLGHSLREKRYDRAYVLPNSFKSALVPLFAGIPHRTGWRGE-RYGLLNDVRVLDKEAWPL-VERYIALAYDKGI-RTAQDLPQPLLWPQLQVSEGEKSYTCNQFSLSSERP-IGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDSGL-HVAAALNRPLVALYGPSSPDFTPPLSHKARVIRLITG----------EGYHQSLIDITPQRVLEELNALLLQEE-
6	HHPRED-g	1psw_A	0.997	0.917	6.635	threading_6	-KILVIGPSWVGD---SQSLYRTLQARYPQAIIDV-APAWCRPLLSR-PEVNEAIP--------EIGERRKLGHSLREKRYDRAYVLPNSFKSALVPLFAGIPHRTGWRGE-RYGLLNDVRVLDKEAWPL-VERYIALAYDKGI-RTAQDLPQPLLWPQLQVSEGEKSYTCNQFSLSSERP-IGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDSGL-HVAAALNRPLVALYGPSSPDFTPPLSHKARVIRLITG----------EGYHQSLIDITPQRVLEELNALLLQEEA
7	SP3	3tova	0.232	0.943	6.061	threading_7	YKRIVVTFLHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQV-EYNPNIDELIVVDKKGRHNSISGLNEVAREINAKKTDIVINLHPNERTSYLAWKIHAPITTGSHFLFR--PFTKYTRLDRKT--RHAADYINVLEQLGVTDTSNSGLHIEICEE---WRCQAQEFYSSHGLTDTDILIGFNIGSAV-PEKRWPAERFAHVADYFGRLGYKTVFFGGPDL-----EVQPVVE--QETKPIVATGKFQLGPLAA-ANRCNLLITNDSG-PHVGISQGVPIVALYGPSNPFFYGPYQAHAIVLETDSYEIGKSKKIIKEGNYKGLSVISEEQVIKAAETLLLES--
8	SAM-T99	1pswA	0.918	0.917	6.172	threading_8	-KILVIGPSWVGD---SQSLYRTLQARYPQAIIDV-APAWCRPLLSR-PEVNEAIPEIGE--------RRKLGHSLREKRYDRAYVLPNSFKSALVPLFAGIPHRTGWRGERYGLLNDVRVLDKE--AWPLVERYIALAYDKGIRTA-QDLPQPLLWPQLQVSEGEKSYTCNQFSLSSER-PIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDSGL-HVAAALNRPLVALYGPSSPDFTPPLSHKARVIRLITG----------EGYHQSLIDITPQRVLEELNALLLQEEA
9	MUSTER	3tovA	0.227	0.937	2.559	threading_9	YKRIVVTFLHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQV-EYNPNIDELIVVDKKGRHNSISGLNEVAREINAKKTDIVINLHPNERTSYLAWKIHAPITTGSHFLFRP--FTKYTRLDRKT--RHAADYINVLEQLGVTDTSNSGLHIEICEE---WRCQAQEFYSSHGLTDTDILIGFNIGSAV-PEKRWPAERFAHVADYFGRLGYKTVFFGGPDLE--VQPVVEQ------TKPIVATGKFQLGPLAAA--RCNLLITNDSG-PHVGISQGVPIVALYGPSNPFFYGPYQAHAIVLETDSYEIGKSKKIIKEGNYKGLSVISEEQVIKAAETLLLES--
10	SPARKS	1pswa	0.975	0.917	5.177	threading_10	-KILVIGPSWVGD---SQSLYRTLQARYPQAIIDV-APAWCRPLLSR-PEVNEAI--------PEIGERRKLGHSLREKRYDRAYVLPNSFKSALVPLFAGIPHRTGWRGE-RYGLLNDVRVLDKEAW-PLVERYIALAYDKGI-RTAQDLPQPLLWPQLQVSEGEKSYTCNQFSLSSERP-IGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDSG-LHVAAALNRPLVALYGPSSPDFTPPLSHKARVIRL----------ITGEGYHQSLIDITPQRVLEELNALLLQEEA

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.948 to 1pswA TM-score=0.989 to native SCOP code=c.87.1.7	TM-score=0.808 to 1pswA TM-score=0.840 to native SCOP code=c.87.1.7	TM-score=0.811 to 1pswA TM-score=0.843 to native SCOP code=c.87.1.7	TM-score=0.799 to 1pswA TM-score=0.831 to native SCOP code=c.87.1.7	TM-score=0.947 to 1pswA TM-score=0.988 to native SCOP code=c.87.1.7

Experimental Structure

Download 1pswA

SCOP code=c.87.1.7