Template-based Modeling Results for RBSA_ECOLI

Submitted Primary Sequence

>Length 501
MEALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGTLLWLGKETTFTGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGKIDWKTMYAEADKLLAKLNLRFKSDKLVGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQFIAEREVASLTEDSLIEMMVGRKLEDQYPHLDKAPGDIRLKVDNLCGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNVKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKADGLSIILVSSEMPEVLGMSDRIIVMHEGHLSGEFTREQATQEVLMAAAVGKLNRVNQE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MEALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGTLLWLGKETTFTGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGKIDWKTMYAEADKLLAKLNLRFKSDKLVGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQFIAEREVASLTEDSLIEMMVGRKLEDQYPHLDKAPGDIRLKVDNLCGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNVKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKADGLSIILVSSEMPEVLGMSDRIIVMHEGHLSGEFTREQATQEVLMAAAVGKLNRVNQE
CCEEEEEECCEEECCCCEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHHHCCCEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCEEEEEECCCEEEEEEHHCCCHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHHHCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCCEEEEEECCEEEEEECHHCCCHHHHHHHHHCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MEALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGTLLWLGKETTFTGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGKIDWKTMYAEADKLLAKLNLRFKSDKLVGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQFIAEREVASLTEDSLIEMMVGRKLEDQYPHLDKAPGDIRLKVDNLCGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNVKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKADGLSIILVSSEMPEVLGMSDRIIVMHEGHLSGEFTREQATQEVLMAAAVGKLNRVNQE
432001021011101102002200020120200000011110100001000001232201000212202130131025010000001011022020000000022123410201131012102400330304131322112011011100200210123020000111111123310210030022034321000000020310120011000011120001120320122100111001303221132332321200201201132033000201201000000011000000010010013322020003112021410310032000000222332100111002100000002101411000322212200220032030302223211221221111100001002221200001100210111011100200110242210000000202200210100000020100010233202220000001132342344
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MEALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGTLLWLGKETTFTGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGKIDWKTMYAEADKLLAKLNLRFKSDKLVGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQFIAEREVASLTEDSLIEMMVGRKLEDQYPHLDKAPGDIRLKVDNLCGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNVKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKADGLSIILVSSEMPEVLGMSDRIIVMHEGHLSGEFTREQATQEVLMAAAVGKLNRVNQE
1	SPARKS	1yqta	0.216	0.904	5.597	threading_1	------EEDCVHRY-GVNAFVLYRLPVVKEGVVGIVGPNGTGKSTAVKILAGQLIPNGDNDSWDGVIRAFRGYFEKLKNGPVVKPQYVDLIPKAVKGKVIEL----------LKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLKDENVRFRPYEVEIERETLVTYPRLGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVK-LAGVEEPTEGKIEWDLT--------------VAYKPQYIK---ADYEGTVYELLSKIDASKLNS----------NFYKTELLKPLGII-DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLEKNEKTALVVEHDV-LIDYVSDRLVFEGEPGKYGRALPPGREGNRFLA-SIGITFRRDPD
2	PROSPECT2	1yqtA	0.207	0.906	4.196	threading_2	EE------DCVHRY-GVNAFVLYRLPVVKEGVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIEL----------LKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNFLRGYLKDENVRFRPYEIKIERETLVTYPRLGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVK-LAGVEEPTEGKIEWDL--------------TVAYKPQYIK---ADYEGTVYELLSKIDASKLNS----------NFYKTELLKPLGII-DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLEKNEKTALVVEHDV-LIDYVSDRLVFEGEPGKYGRALPPGREGNRFLASIGITFRRDPDT
3	PPA-I	3ozxA	0.194	0.906	4.194	threading_3	------EGEVIHRY-KVNGFKLFGLPPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKKRFRGFKELYSNELKIVHKIQYVE------------YASKFLKGTVNEILTKIKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-KNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAEDEIKFMLKLKTKMKWTKIGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKP----------------QRIFPNYDGTVQQYLENAS-----KDALSTSS----WFFEEVTKRLNL-HRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTREKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFL-RELEVDAE
4	HHPRED-l	1yqt_A	0.209	0.888	2.355	threading_4	-----E-EDCVHRYGVNFVLYRLP-VVKEG-VVGIVGPNGTGKSTAVKILAGQLIPNLDNDSWDGVIRAFNELEKLKNGEIRPVVKPQDLIPKAVKGKVIELL----------KKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGISQPKGTRNGINEFLRGYENVRFRPYRVEIERETLVTYPRLVKFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVK-LAGVEEPTEGKIEWDLT--------------VAYKPQYI---KADYEGTVYELLSKIDAS----------KLNSNFYKTELLKPLGI-IDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL-EKEKTALVVEHDVL-IDYVSDRL-VFEPGKYGRALPP---REG--NRFLASIGFRRDP-
5	HHPRED-g	1yqt_A	0.220	0.880	2.221	threading_5	----------EED--CVHRYGVNAFVLYEG-VVGIVGPNGTGKSTAVKILAGQLIPNLDNDSWDGVIRAFRGNLKNGEIRPVVKPQYVDLIPKAVKGKVIELLK----------KADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGYGIFSQPKGTRNGINEFLRGYLKDENRPYEVEIERETLVTYPRLVKFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVK-LAGVEEPTEGKIEWDLT--------------VAYKPQY---IKADYEGTVYELLSKIDASK-------L---NSNFYKTELLKPLGII-DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL-EKEKTALVVEHDVL-IDYVSDRL-VFEPGKYGRALPP----REG-NRFLASIGITFRRD
6	SP3	1yqta	0.223	0.904	6.082	threading_6	-----E-EDCVHRY-GVNAFVLYRLPVVKEGVVGIVGPNGTGKSTAVKILAGQLIPNLCNDSWDGVIRAFRGKLKNGEIRPVVKPQYVDLIPKAVKGKVIEL----------LKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPVYGIFSQPKGTRNGINEFLRGDENVRFRPYEIKFTRETLVTYPRLVSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVK-LAGVEEPTEGKIEWDLT--------------VAYKPQYIK---ADYEGTVYELLSKIDASKLNS----------NFYKTELLKPLGII-DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLEKNEKTALVVEHDV-LIDYVSDRLVFEGEPGKYGRALPPGREGNRFLA-SIGITFRRDPD
7	SAM-T99	1g6hA	0.291	0.487	2.667	threading_7	TMEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SDPKVVEIYIG--------
8	SPARKS	1g6ha	0.301	0.477	3.564	threading_8	M-EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGEKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEESDPKVVEIYIGE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	PROSPECT2	3ozxA	0.204	0.892	2.005	threading_9	EGEVIHR-------YKVNGFKLFGLPTKNNTILGVLGKNGVGKTTVLKILAGEIIPN------FGDPNSKVGKDEVLKKEIYNYFKELSKFLKGTVNEILTKIDERGKK-------------DEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL-LKNKYVIVVDHDLIVLDYLTDLIHIIY-GESSVYGRVSKSARVGINNFLKGPAENMKIRPDEIKFMKTKMKWTKIGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYK---------PQRIFPN-------YDGTVQQY-----LENASKDALSTSS----WFFEEVTKRLNLH-RLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTREKAVTFIIDHDLSIHDYIADRIIVFKAGLATSPVTLKTGMNEFLRELEVDAETGRLST
10	PPA-I	1g6hA	0.296	0.479	4.119	threading_10	TMEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEESDPKVVEIYIGE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.583 to 1sgwA SCOP code=c.37.1.12	TM-score=0.561 to 1sgwA SCOP code=c.37.1.12	TM-score=0.564 to 1sgwA SCOP code=c.37.1.12	TM-score=0.585 to 1sgwA SCOP code=c.37.1.12	TM-score=0.578 to 1ji0A SCOP code=c.37.1.12