Template-based Modeling Results for RARD_ECOLI


  Submitted Primary Sequence

>Length 296
MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYTQRRTSK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYTQRRTSK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYTQRRTSK
55233221000000000000000000020023010100000000000000000000022021012202122300000000000000000000012113001000000000000000000002230231100000000000001012102000000000000000000122031301100000000000000000000012220211212110000000000010000000010023031110000110000000000000122302121000000000000000020112233235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYTQRRTSK
1MUSTER3zuxA0.1400.9391.043threading_1LSSSFIGKTFSLWAALFAAAAFFPDTFKWAGPY---------IPWLLGIIMFGMGLTLKPSDFDILFKHPVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCP-TASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFGELMSIVKMVLLPIVLGLIVHKVLGTEKLTDALPLVSVAAIVLIIGAVVGA-----SKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLKALTIEVGMNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKA---
2SPARKS2x1gf0.0700.9191.335threading_2GGPKIVLNRLCISLGAYIVHMLGEEVINTFQNQRSADVQLWIMLEVLTAIPEEAQVIHKRVVLRAEIAKRVQLVIHTVERYLKLQM-----------NRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHKCYWPCIHDENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKREND---NEDIIVHIYMLFVSSVERHSTLLLSGITSADP----ELSILVHRIVQEILHCTDKPGIYPVEESC------STMALAFWYMLQDEVFAHK
3PROSPECT22bkuB20.1130.9531.609threading_3---TDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA---DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLLNQVDSP-----VSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGFIPYLNDIMALCVAAQNTKPENGTLEALDYQIK---VLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAWVIDYIKRTRSGQL
4PPA-I3zuxA0.1120.9661.497threading_4LSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPY------IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFGMLMSIVKMVLLPIVLGLIVHKVLG-SKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYKALTIEVGMNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKA---
5HHPRED-l3b5d_A0.1110.3343.316threading_5--------------------------------------------------------------------------------------------------------------------------------------------------------YLGGAILAEVIGTTLMKFS-------------------------------EGFT---R--LWPSVGTIICYCASFWLLAQTLAYIPTGIAYAISGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS---------
6HHPRED-g3b5d_A0.1340.3282.753threading_6---------------------------------------------------------------------------------------------------------------------------------------------------------YLGGAILAEVIGTMKFSE-----------------------------G---F-----TRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAISGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS---------
7SP33zuxa0.1470.9390.509threading_7LSKSFIGKTFSLWAALFAAAAFFPDTFKWAGPY---------IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFIMPATAWCLSKLLNLGVILVGCCSNVMTYLVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGTEKLTDALPLVSVAAIVLIIGAVVGA--SKGKIM---ESGLLIFAVVVLHNGIGYLLGFFAAKWTGLKALTIEVGMNSGLAAALAAAHFAAA----PVVAVPGALFSVWHNISGSLLATYWAAK
8SAM-T993b61A0.1560.3240.704threading_8--------------------------------------------------------------------------YIYLGGAILAE--------------------------------------------------------VIGTTLMKFSWPSVGTIICYCA-------------FWLLAQTLAYIPTGIAYAI-------------------------------------------------WSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR--------
9MUSTER1t5jA0.1150.8820.856threading_9VKMRDKILGSVFGAVIGDALGMKEEIKKLYGFVDSYV-LAGKLDDTEQAICLIKSLTKEGIDIKKFAN--CLIAWKNKNPPDIGLTSLMAIDKLENNDYSGV--SSSCGAAMRIYPLGIVFHNNLKKLKEEVIKASKI---------NNKTAIAGALAIAFFVSSALKDRKD----FSLLDECYNYIKDIDEEFAKKLLEIK---NFNNLDYIYDYFGTGVKTDEVVPSAIATYLLTD----------NFKEGMLKCINAGGD---TDSLASMYGAMAGAYYGF-KEWIDGLKNKE
10SPARKS2xwub0.1190.9661.233threading_10ISNVQLADTVMFTIGA---------LSEWLADHPVLHALGNPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHPNPVVVVLQQVFQLIQKVLSKWLNDAVKTLLDDFAPMVPQLCEMLGRMYSTIPQIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFL-CERLDVKAVFQCAVLAAPTVKASCGFFTELLPRCG

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.420 to 1j30A
SCOP code=a.25.1.1
TM-score=0.429 to 1pv6A
SCOP code=f.38.1.2
TM-score=0.653 to 2vglB
SCOP code=i.23.1.1
TM-score=0.756 to 3ea5B
SCOP code=a.118.1.1
TM-score=0.422 to 1wu3I
SCOP code=a.26.1.3