Template-based Modeling Results for RADA_ECOLI

Submitted Primary Sequence

>Length 460
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL
CCCCCCCEEECCCCCCCCCCCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEECCCCHHHHHHHCCCEECCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEEECCCCEEEECCCEEEECCCCCCCCCEEEEEEEEECCCEEEEEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHCCCCEEEECHHCCCCCCCCCCEEEEECCHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL
5443332101022011221311020121421110111212233222333422222122222311202312233121022213100200210002000000002221010000010001004313000011322231001103312232320100020113200200343312000000110011231322222021022001200310333200000001003322210121011000000002022323222121232321212210001113311120222001122322322100000001211310001000012323221233102001210110010001220323023200000001002022100000000000010242302310000010001010120220221012024121210000221134423310100002302200200232
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL
1	MUSTER	3dvlA	0.189	0.807	1.229	threading_1	---------------------------------------------------------------------EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIDEPGVFVTFEETPQDIIKNARSFGWDEGKLFILDSALIERINYAIQKYRARRVSIDSVTSVF-----QQYDASSVVRRELFRLVARLKQIGATTVMTTEIEEYGPIARYGVEEFVSDNVVILRNVLERRRRTLEILKLR-GTSHMEYPFTITDHGINIFPLGAMRLTQRSSNVFKDSIILATGAGTGKTLLVSRFVENACANKE-RAILFAYE-ESRAQLLRNAYS--GMDFEEMLLKIVCAYPESAG-LEDHLQIIKSEINDFK-----PARIAIDSLALA-AFRQF--VIGVTGYAKQEEITGLFT-FMGAHSITDSHILLQYVEIRGEMSRAINVF
2	SPARKS	2cvfa	0.246	0.441	3.862	threading_2	---------------------------------------------------------------------------MLSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLS--GKKVAYVDTEGSPERLVQMAETRGLNPERFILFTPSDFKEQRRVIGSLNFALVVVDSITAHYRAE-ENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRPVAEQTLGYRCKDILRLDKLPKPGLRVAVLERHRFRPEGLMAYFRITERGIEDVE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	1tf7A	0.181	0.791	2.426	threading_3	---------------------------------------------------------------------EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIDEPGVFVTFEETPQDIIKNARSFGWDEGKLFILDASPIERINYAIQKYRARRVSIDSVTSVF-----QQYDASSVVRRELFRLVARLKQIGATTVMTTRIEEYGPIARYGVEEFVSDNVVILRNVLERRRRTLEILKLRGTSHKGEYPFTITDHGINIFPLGAMRLTQRSSNVRKDSIILATGNKERAILFAFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPAR----IAIDSLSALARGVSNNAFRQFVIGVTGYAHSITDSHIILLQYVEIRGEMS------------------RAINVFKMRGSWHDKAIREFMISDIKDSFRNFERI
4	PPA-I	2cvfA	0.246	0.441	2.488	threading_4	---------------------------------------------------------------------------MLSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLS--GKKVAYVDTEGSPERLVQMAETRGLNPSRFILFTPSDFKEQRRVIGSLNFALVVVDSITAHYRAE-ENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRPVAEQTLGYRCKDILRLDKLPKPGLRVAVLERHRFRPEGLMAYFRITERGIEDVE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	HHPRED-l	3m6a_A	0.163	0.891	2.848	threading_5	LNRYEKIPSSSAESSRNYIDWLVALP----WTDETDDKL-----------------DLKEAGR-LLDEHHG--LEKVKERILELAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR--KFVRISL----------GMKKAGKLNPVFLLDEIDK-AMLEVLDPEQSKVLFIATAATRM-EIINIAGYTEIEKLEIVKDLPKQIKEHGLK--------KSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAIVAEERKRITVTEKNLQDFIGKRIFRYGQAEEDQVGVVTGLAYTTVGGDTLSIEVSLSP---GKGKLILTGVMRESAQAAFSYVRSELGIEHEKYDIHIHVPEGVPKDGPAAGITMATALVSALTGRAVSREVGMTGEITLRGRVLPIGGLKEKALGAHRAGLTTIIAPKDNEKDIEREGLTFILASHLDEVLEHALV-
6	HHPRED-g	3io5_A	0.146	0.522	2.644	threading_6	---------------------------------------------------------------------------VVRTKIPMMNIALSGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRDAVCLFYDSEFGITP--AYLRSMGVDPERVIHTPVQSLEQMVNQLDRGEKVVVFIDSLGNLAS---------MTRAKTMKSLVTPYFSTKNIPCIAINHT---------TGPMYSADTVFIIG------YQFLNVEKSRTVKEKSKFFIDVKDGGIDPYSGLLDMALELGFVVKKNGWY------AREFLDEMI--REEKSW--RAKDTNCTTFWGPLPFRDAIKRAYQLG------------------------------------------------------------------------------------------------------------
7	SP3	2cvfa	0.246	0.441	3.968	threading_7	---------------------------------------------------------------------------MLSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLSG--KKVAYVDTEGSPERLVQMAETRGLNPSRFILFTPSDFKEQRRVIGSLKKALVVVDSITAHYRAE-ENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRPVAEQTLGYRCKDILRLDKLPKPGLRVAVLERHRFRPEGLMAYFRITERGIEDVE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8	SAM-T99	1xhkB	0.260	0.393	2.212	threading_8	HEPKV-------------------------------------------------------------------------------------GVIYGLAVL--GAGGIGDVTIIVQILESKNPGTHLLNISGDIAKHSITLASA--------------------------------------------------------------------------------------------------------------------------------------------LSKKLVAEKKLPLP---------------------------------------------------KKDIDLNNKEIYIQFSQSYKIDGDSATAAVCLAIISALLDIPLKQDFAITGSLDLSGNVLAIGGVNEKIEAAKRYGFKRVIIPEANIDVIETEGIEIIPVKTLDEIVPLVFD-
9	MUSTER	2cvfA	0.246	0.441	1.203	threading_9	---------------------------------------------------------------------------MLSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLS--GKKVAYVDTEFSPERLVQMAETRGLNPSRFILFTPSDFKEQRRVIGSLKFALVVVDSITAHYRAE-ENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSKPVAEQTLGYRCKDILRLDKLPKPGLRVAVLERHRFRPEGLMAYFRITERGIEDVE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10	SPARKS	2w0ma	0.234	0.428	3.019	threading_10	------------------------------------------------------------------------MVSRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGPCIYVTTEESRDSIIRQAKQFNWDEKKLIIIDALMVNKVIEAKQKLGKARLVIDSVSALFLD-------KPAMARKISYYLKRVLNKWNFTIYATS-----------QGVEHVADGIIRFRRMIRNLHRYILIEKMR-QTDHDKHVWEIDIV------NGKGIVLKGRLEE----------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.554 to 1pznA SCOP code=a.60.4.1	TM-score=0.533 to 1pznA SCOP code=a.60.4.1	TM-score=0.550 to 1xu4A SCOP code=a.60.4.1	TM-score=0.551 to 1pznA SCOP code=a.60.4.1	TM-score=0.552 to 1pznA SCOP code=a.60.4.1