Template-based Modeling Results for PYRD_ECOLI

Submitted Primary Sequence

>Length 336
MYYPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPAKPVNCMGLTFKNPLGLAAGLDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVTHI
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MYYPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPAKPVNCMGLTFKNPLGLAAGLDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVTHI
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCEECCCCCEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHCCHHHHHCCCCHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MYYPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPAKPVNCMGLTFKNPLGLAAGLDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVTHI
312210220013011320130002002201202131113331322101001020310000000013102001000200000010000123333213301002013220000110022200220021024232301000000313321122012100200210131010010000012031132131130022002002211221232333321100100220233101200200241301000000011222113223123221000131012100200220032032300000000020020011102000100200000113013003202342
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MYYPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPAKPVNCMGLTFKNPLGLAAGLDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVTHI
1	MUSTER	1f76A	0.988	0.979	3.152	threading_1	-YYPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPAKP-VNCGLTFKNPLGLAAGLDKDGECIDALGA-GFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINR-GFNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLIC-EKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAH-HKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQG-KNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVTHI
2	SPARKS	1f76a	0.960	0.979	6.082	threading_2	-YYPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALV-RQKVPAKPVNCGLTFKNPLGLAAGLDKDGECIDALGA-GFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINR-GFNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLI-CEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQ-AHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQG-KNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVTHI
3	PROSPECT2	1tv5A	0.401	0.979	4.331	threading_3	LYDIFLKFCLKYIDGEICHDLFLLLGK---YNILPYDTSNDSIYACTNIKHLDFINPFGVAAGFDKNGVCIDSILKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTENLILFLSKHIVGVSIGKNKDTV--NIVDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEFTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFE--NKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKREL
4	PPA-I	1f76A	0.988	0.979	4.074	threading_4	-YYPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPAKP-VNCGLTFKNPLGLAAGLDKDGECIDALGA-GFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINR-GFNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLIC-EKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAH-HKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQG-KNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVTHI
5	HHPRED-l	1f76_A	1.000	0.976	4.175	threading_5	-YYPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPAKPVNC-GLTFKNPLGLAAGLDKDGECIDALGA-GFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINR-GFNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLIC-EKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQA-HHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQG-KNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVTH-
6	HHPRED-g	1tv5_A	0.405	0.970	5.397	threading_6	FLYDILKFCLKYIDGEICHDLFLLLGKY-NILPY--DTSNDSIYACTNIKHLDFINPFGVAAGFDKNGVCIDSILKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTENLILFRSKHIVGVSIGKNKDTV--NIVDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLE---KKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKS--FENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKREL
7	SP3	1f76a	0.973	0.979	6.084	threading_7	-YYPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVP-AKPVNCGLTFKNPLGLAAGLDKDGECIDALG-AGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINR-GFNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLI-CEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQ-AHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQG-KNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVTHI
8	SAM-T99	2prmA	0.392	0.979	7.571	threading_8	YAEHLMPTLQGLLDPESAHRLAVRFTSLGLLP---RARFQDSDMLEVRVLGHKFRNPVGIAAGFDKHGEAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRLRARQDGLPLGVNLGKNKTS--VDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDG--LRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKREL
9	MUSTER	2prmA	0.398	0.979	2.764	threading_9	YAEHLMPTLQGLLDPESAHRLAVRFTSLGL---LPRARFQDSDMLEVRVLGHKFRNPVGIAAGFDKHGEAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRLRAREDGLPLGVNLGKNKTSV--DAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVH--RPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKREL
10	SPARKS	1tv5a	0.401	0.979	5.816	threading_10	LYDIFLKFCLKYIDGEICHDLFLLLGKYNI---LPYDTSNDSIYACTNIKHLDFINPFGVAAGFDKNGVCIDSILKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTENLILFRSKHIVGVSIGKNKDTV--NIVDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEFTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKS--FENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKREL

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.988 to 1f76A TM-score=0.999 to native SCOP code=c.1.4.1	TM-score=0.988 to 1f76A TM-score=0.998 to native SCOP code=c.1.4.1	TM-score=0.988 to 1f76A TM-score=0.998 to native SCOP code=c.1.4.1	TM-score=0.928 to 1f76A TM-score=0.938 to native SCOP code=c.1.4.1	TM-score=0.988 to 1f76A TM-score=0.999 to native SCOP code=c.1.4.1

Experimental Structure

Download 1f76A

SCOP code=c.1.4.1